| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1086962 = | 217 (1.070) | 13 (0.070) | 7/140 | NT | 7.0% | coding (131/1401 nt) | ykoD_1 | Putative HMP/thiamine import ATP‑binding protein YkoD |
| ? | USA300TCH1516_ALE | 1087000 = | 156 (0.880) | coding (93/1401 nt) | ykoD_1 | Putative HMP/thiamine import ATP‑binding protein YkoD | |||||
ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087061‑1086962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA > USA300TCH1516_ALE/1087000‑1087089 ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGG > 2:3810505/1‑91 TCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGTGGT < 2:3315728/91‑1 TCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGT > 2:1352298/1‑91 TCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCCGGTTGCGGT > 2:115453/1‑91 CCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTA < 1:3645593/91‑1 CCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTA > 2:1440164/1‑91 CAAGTGGTCAACGTAAAATTTTCCATCATTTAAATATCACTATTCAAGACAAAGACAAAGTACTTTTACTCGGTCCATCTGAATGCGGTAA > 2:1714439/1‑91 AAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAA < 1:627567/91‑1 AGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAACAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAA > 2:3119835/1‑91 AGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAA > 2:2318660/1‑91 AGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAA > 2:1437355/1‑91 AGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCCGTCCTTCTGGTTGCGGTAAAA > 2:1167677/1‑91 GTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAG < 1:1040100/91‑1 GTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAG > 2:1151183/1‑91 GTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAG < 1:1323918/91‑1 GTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAG < 1:130714/91‑1 TGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAATGAAAGAGTACTTTTACTCGATCCTTCTGGTTGCGGTAAAAGT < 2:43335/91‑1 GGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTA < 1:1026186/91‑1 GGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTA < 1:399840/91‑1 GGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTA < 1:399858/91‑1 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC < 1:3017977/91‑1 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC > 2:2311408/1‑91 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC > 1:950614/1‑91 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC < 1:734546/91‑1 GTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC < 1:558381/91‑1 AGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGA > 1:3066314/1‑91 TACTTTTACTCGGTCCTTCTGGTTGCGGTAATAGTACTTTTTCTTTGTCTTGAATAGAGATATTTAAATGATCGAAAATTTTACGTTGACC > 1:3505709/1‑91 ACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCA > 1:682738/1‑91 ACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCA > 1:32422/1‑91 ACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCA > 1:3356894/1‑91 ACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCA > 1:3447474/1‑91 TTTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTT > 1:1933253/1‑91 TTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTG > 2:767002/1‑91 TTACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTG > 2:766907/1‑91 ACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGCAAATTTTACGTTGACCACTTGGA > 2:236015/1‑91 ACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGA > 1:3754996/1‑91 ACTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGA > 1:3754995/1‑91 CTCGGTCCTTCTGGTTGCGGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGAT > 1:3195381/1‑91 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 1:420399/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 2:1299254/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT > 1:3214082/1‑91 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 1:2745360/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 1:1560463/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 1:1560471/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 2:3457706/91‑1 GTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACT < 1:1591801/91‑1 TAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTT > 2:16384/1‑91 AAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTAC > 2:1237957/1‑91 AAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACT > 2:338538/1‑91 AAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACT < 2:2835669/91‑1 AGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTACTCGTAAATCACTTACTT > 2:230619/1‑91 AGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTT > 1:3633259/1‑91 AGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTT > 1:3632772/1‑91 GTACTTTTTTTTTTTTTTTAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT > 2:2110007/1‑91 GTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT < 1:1624721/91‑1 GTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT < 2:2973608/91‑1 GTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT < 1:3522406/91‑1 GTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTT < 2:734546/91‑1 ACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTA > 2:493466/1‑91 ACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTA > 1:3259043/1‑91 CTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA > 1:247550/1‑91 CTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA < 1:879947/91‑1 ATCCAAGTGGTCAACGTAAAATTTTCGATCATTTAAATATCACTATTCAAGACAAAGAAAAAGTACTTTTACTCGGTCCTTCTGGTTGCGGTAAAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1087061‑1086962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAA > USA300TCH1516_ALE/1087000‑1087089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |