BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1086962 =	217 (1.070)	13 (0.070)	7/140	NT	7.0%	coding (131/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD
*	?	USA300TCH1516_ALE	1087000 =	156 (0.880)	13 (0.070)	7/140	NT	7.0%	coding (93/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD

Only 100 of 258 total aligned reads displayed.

CATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAAC  >  USA300TCH1516_ALE/1086910‑1087090

cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                                                             >  2:1650386/1‑91 (MQ=255)

 aTAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtt                                                                                            <  1:704417/91‑1 (MQ=255)

  tAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttt                                                                                           <  1:3603319/91‑1 (MQ=255)

  tAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttt                                                                                           <  1:2862235/91‑1 (MQ=255)

   aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                                          <  2:740792/91‑1 (MQ=255)

   aGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtttt                                                                                          <  1:404140/91‑1 (MQ=255)

     gTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                                                        <  2:1397105/91‑1 (MQ=255)

     gTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                                                        <  1:2095717/91‑1 (MQ=255)

      tAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCt                                                                                       <  2:193886/91‑1 (MQ=255)

         ttCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTg                                                                                    <  2:951877/91‑1 (MQ=255)

          tCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGt                                                                                   <  2:220391/91‑1 (MQ=255)

              ttaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTg                                                                               <  1:2675683/91‑1 (MQ=255)

               taaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGa                                                                              >  2:2149415/1‑91 (MQ=255)

                aaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGaa                                                                             >  2:2820422/1‑91 (MQ=255)

                aaatgaGGAACAAGACCACCTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGGCTTGaa                                                                             <  2:685385/91‑1 (MQ=255)

                 aattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTTTTTTGAAt                                                                            >  2:1290790/1‑91 (MQ=255)

                 aattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAAt                                                                            >  2:341328/1‑91 (MQ=255)

                     aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAggg                                                                        >  2:1823664/1‑89 (MQ=255)

                     aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                                                        <  1:1788142/91‑1 (MQ=255)

                     aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                                                        <  2:1517325/91‑1 (MQ=255)

                     aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTCGAATAGTg                                                                        >  2:635982/1‑91 (MQ=255)

                     aGGAACAATACCACCTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                                                        >  2:3359826/1‑91 (MQ=255)

                         aCAATACCACTTAATATATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  2:3775065/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  1:3703661/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  1:884982/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  2:3963484/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  2:3641004/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  2:1764038/91‑1 (MQ=255)

                         aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                                                                    <  1:1790602/91‑1 (MQ=255)

                          cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                                                                   >  1:3810754/1‑91 (MQ=255)

                          cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                                                                   >  2:789526/1‑91 (MQ=255)

                                 tcTTAATACATTCAGAAGTGTACTTGTACCGCAACCAGAAGGACCAAGTAAAAGTACTTTTCCTTTGTCTTGAATAGTGATATTTAAATGa                                                            <  2:1585116/90‑1 (MQ=255)

                                 aCTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGa                                                            >  1:1071641/1‑91 (MQ=255)

                                 aCTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGa                                                            >  1:2296416/1‑91 (MQ=255)

                                  cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                                                           >  1:1470108/1‑91 (MQ=255)

                                  cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                                                           <  1:1576622/91‑1 (MQ=255)

                                   ttAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATc                                                          <  2:2761624/91‑1 (MQ=255)

                                    tAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTCCTTTGTCTTGAATAGTGATATTTAAATGATCg                                                         <  2:1124613/91‑1 (MQ=255)

                                      aTACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaa                                                       >  2:660862/1‑91 (MQ=255)

                                      aTACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaa                                                       >  1:1965413/1‑91 (MQ=255)

                                        aCATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaaaa                                                     <  1:2634143/91‑1 (MQ=255)

                                         cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt                                                    >  1:765463/1‑91 (MQ=255)

                                          aTTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCTAGTAAAAGTACTTTGTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAtt                                                   <  2:181616/91‑1 (MQ=255)

                                                   tgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑a                                         >  1:2401570/1‑91 (MQ=255)

                                                   tgtACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑a                                         >  1:983660/1‑91 (MQ=255)

                                                   agtacttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑a                                         >  1:3066314‑M2/40‑91 (MQ=255)

                                                    GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑Ac                                        <  1:3017977‑M1/91‑1 (MQ=255)

                                                    GTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑Ac                                        >  1:950614‑M1/1‑91 (MQ=255)

                                                     TACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑Acc                                       <  1:1026186‑M1/91‑1 (MQ=255)

                                                     TACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑Acc                                       <  1:399840‑M1/91‑1 (MQ=255)

                                                      acttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCa                                      >  1:3447474‑M2/37‑91 (MQ=255)

                                                      acttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCa                                      >  1:32422‑M2/37‑91 (MQ=255)

                                                      acttttactcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCa                                      >  1:3356894‑M2/37‑91 (MQ=255)

                                                       CTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCAc                                     <  1:130714‑M1/91‑1 (MQ=255)

                                                        TTTTACCGCAACCAGAAGGACGGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACt                                    >  2:1167677‑M1/1‑91 (MQ=255)

                                                        TTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACt                                    >  2:1437355‑M1/1‑91 (MQ=255)

                                                        TTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACt                                    >  2:2318660‑M1/1‑91 (MQ=255)

                                                        TTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTGTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACt                                    >  2:3119835‑M1/1‑91 (MQ=255)

                                                         TTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACtt                                   <  1:627567‑M1/91‑1 (MQ=255)

                                                          TTACCGCATTCAGATGGACCGAGTAAAAGTACTTTGTCTTTGTCTTGAATAGTGATATTTAAATGATGGAAAATTTTACGTTG‑ACCACTTg                                  >  2:1714439‑M1/1‑91 (MQ=255)

                                                            actcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGa                                >  1:3754995‑M2/31‑91 (MQ=255)

                                                            ACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGa                                >  2:1352298‑M1/1‑91 (MQ=255)

                                                            ACCACAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGa                                <  2:3315728‑M1/91‑1 (MQ=255)

                                                             ctcggtccttctggttgcggtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGat                               >  1:3195381‑M2/30‑91 (MQ=255)

                                                             CCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGAt                               >  2:3810505‑M1/1‑91 (MQ=255)

                                                               gCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGatat                             <  1:3839449/91‑1 (MQ=255)

                                                                 aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAttt                           <  1:2230683/91‑1 (MQ=255)

                                                                 aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAttt                           >  2:3095979/1‑91 (MQ=255)

                                                                 aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAttt                           >  2:858847/1‑91 (MQ=255)

                                                                 aaCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAttt                           >  2:1776010/1‑91 (MQ=255)

                                                                  aCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAtttt                          >  2:3513436/1‑91 (MQ=255)

                                                                  aCCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATAtttt                          <  2:2520235/91‑1 (MQ=255)

                                                                   ccAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTa                         <  1:1505726/91‑1 (MQ=255)

                                                                     aGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATCTTTTAAt                       >  2:2825265/1‑91 (MQ=255)

                                                                       aaGGACCGAGTAAAAGTACTTTTTTTTTTTTTTTTTTAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACTACTTGGATATTTTAATCg                     >  2:2559538/1‑91 (MQ=255)

                                                                        aGGACCGAGTACAAGTACTTCTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATATTACGTTG‑ACCACTTGGATATTTTAATCga                    >  2:1241221/1‑90 (MQ=255)

                                                                        aGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGt                    >  2:2350878/1‑91 (MQ=255)

                                                                         ggACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTa                   >  1:2907791/1‑91 (MQ=255)

                                                                            ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATTGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAAt                <  2:2998502/91‑1 (MQ=255)

                                                                            ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAAt                <  1:1414444/91‑1 (MQ=255)

                                                                            ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAAt                >  2:2923697/1‑91 (MQ=255)

                                                                            ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAAt                <  1:3534506/91‑1 (MQ=255)

                                                                            ccGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAAt                <  2:422248/91‑1 (MQ=255)

                                                                             cGAGTAAAAGTACTTTTTTTTTGTCTTGAATACTGATATTTAGCTGATCGGAGATGTTA‑GTTGTACCACTTGGGTATTTTAATCGTAAATc               <  2:2474575/91‑1 (MQ=255)

                                                                             cGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATc               >  2:2221415/1‑91 (MQ=255)

                                                                              gAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCa              <  2:2098848/91‑1 (MQ=255)

                                                                              gAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCa              >  2:1022673/1‑91 (MQ=255)

                                                                               aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCac             >  1:805106/1‑91 (MQ=255)

                                                                               aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCac             <  1:2015345/91‑1 (MQ=255)

                                                                               aGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCac             <  2:3161019/91‑1 (MQ=255)

                                                                                gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCact            <  1:1591801‑M2/81‑1 (MQ=255)

                                                                                gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCact            <  1:1560463‑M2/81‑1 (MQ=255)

                                                                                gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCact            <  1:420399‑M2/81‑1 (MQ=255)

                                                                                gtaaaagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCact            <  1:2745360‑M2/81‑1 (MQ=255)

                                                                                    aagtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCacttact        <  2:2835669‑M2/85‑1 (MQ=255)

                                                                                     agtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTACTCGTAAATCacttactt       >  2:230619‑M2/6‑91 (MQ=255)

                                                                                     agtacTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCacttactt       >  1:3633259‑M2/6‑91 (MQ=255)

                                                                                        acTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCACTTACTTTTa    >  1:3259043‑M2/3‑91 (MQ=255)

                                                                                        acTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCACTTACTTTTa    >  2:493466‑M2/3‑91 (MQ=255)

                                                                                         cTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCACTTACTTTTaa   >  1:247550‑M2/2‑91 (MQ=255)

CATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTG‑ACCACTTGGATATTTTAATCGTAAATCACTTACTTTTAAC  >  USA300TCH1516_ALE/1086910‑1087090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.