BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1086962 =	217 (1.070)	13 (0.070)	7/140	NT	7.0%	coding (131/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD
*	?	USA300TCH1516_ALE	1087000 =	156 (0.880)	13 (0.070)	7/140	NT	7.0%	coding (93/1401 nt)	ykoD_1	Putative HMP/thiamine import ATP‑binding protein YkoD

Only 100 of 282 total aligned reads displayed.

ACGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAC  >  USA300TCH1516_ALE/1086872‑1087052

ttaaaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaag                                                                                            <  1:879947‑M1/1‑1 (MQ=255)

aCGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtg                                                                                            <  1:3353314/91‑1 (MQ=255)

aCGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtg                                                                                            <  2:1433530/91‑1 (MQ=255)

 cGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAgtgt                                                                                           <  2:3874586/91‑1 (MQ=255)

  gCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTa                                                                                          >  1:3204639/1‑91 (MQ=255)

   ccACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTAc                                                                                         >  1:3276291/1‑91 (MQ=255)

   ccACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTAc                                                                                         >  1:2129869/1‑91 (MQ=255)

   ccACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTAc                                                                                         >  2:1624721/1‑91 (MQ=255)

   aaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTAc                                                                                         <  1:1624721‑M1/4‑1 (MQ=255)

   aaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTAc                                                                                         <  1:3522406‑M1/4‑1 (MQ=255)

   aaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTAc                                                                                         <  2:734546‑M1/4‑1 (MQ=255)

   aaagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattaaaaaaaaaaaaaaaGTAc                                                                                         >  2:2110007‑M1/88‑91 (MQ=255)

    cACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACt                                                                                        >  1:2901858/1‑91 (MQ=255)

    aagtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACt                                                                                        >  1:3633259‑M1/87‑91 (MQ=255)

    aagtaagtgatttacgagtaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACt                                                                                        >  2:230619‑M1/87‑91 (MQ=255)

     agtaagtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACtt                                                                                       <  2:2835669‑M1/6‑1 (MQ=255)

      cTTAATGGGTTAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      >  2:180229/1‑91 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:3566722/91‑1 (MQ=255)

      cTTAATGGGTCAACGATTAGTTCATCATAGTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACttt                                                                                      <  1:3166152/91‑1 (MQ=255)

         agtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTAc                                                                                   <  2:1299254‑M1/10‑1 (MQ=255)

         agtgatttacgattaaaatatccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTAc                                                                                   <  2:3457706‑M1/10‑1 (MQ=255)

         aaTGGGTCAACGATTAGTTCATCATATTTCCTAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTAc                                                                                   >  2:594898/1‑91 (MQ=255)

         aaTGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTAc                                                                                   >  2:3148718/1‑91 (MQ=255)

            gggTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGc                                                                                >  2:3116786/1‑91 (MQ=255)

            gggTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGc                                                                                <  1:178967/91‑1 (MQ=255)

             ggTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCa                                                                               >  1:625283/1‑91 (MQ=255)

              gTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCaa                                                                              >  2:1650784/1‑91 (MQ=255)

               tCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAAc                                                                             <  1:1872753/91‑1 (MQ=255)

                 aaCGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCa                                                                           >  2:753628/1‑91 (MQ=255)

                  aCGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAg                                                                          <  1:46582/91‑1 (MQ=255)

                  aCGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAg                                                                          <  2:1687532/91‑1 (MQ=255)

                      ttAGTTCATCATATTTCATAGGTAATTTAATTAAATTAGGAACAATACAACTTAATACATTCAGAAGTGTACTTTTACTCCAACCAGAAgg                                                                      >  2:1121819/1‑91 (MQ=255)

                      ttAGCTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGCAgg                                                                      >  2:437773/1‑91 (MQ=255)

                       tAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACTACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGa                                                                     >  2:1012158/1‑91 (MQ=255)

                       tAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGa                                                                     >  2:1148445/1‑91 (MQ=255)

                       tAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGa                                                                     <  1:221074/91‑1 (MQ=255)

                       tAGTTCATCATATTTCATAGGTAATTCAAGTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGa                                                                     <  2:266081/91‑1 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAACTTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    >  1:1224833/1‑91 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTCCCGCAACCAGAAGGAc                                                                    >  2:3035894/1‑91 (MQ=255)

                        aGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAc                                                                    >  1:3553144/1‑91 (MQ=255)

                         gTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAcc                                                                   >  2:969676/1‑91 (MQ=255)

                         gTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGAcc                                                                   <  1:409722/91‑1 (MQ=255)

                          ttCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCg                                                                  >  2:3037428/1‑91 (MQ=255)

                          ttCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCg                                                                  <  2:1372875/91‑1 (MQ=255)

                           tcatcaTATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGa                                                                 <  1:3739030/91‑1 (MQ=255)

                            catcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAg                                                                >  1:2836624/1‑91 (MQ=255)

                             tccaagtggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGt                                                               >  1:3754996‑M1/62‑91 (MQ=255)

                             tccaagtggtcaacgtaaaatttgcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGt                                                               >  2:236015‑M1/62‑91 (MQ=255)

                             atcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGt                                                               <  2:2266860/91‑1 (MQ=255)

                             atcatATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGt                                                               <  2:1553288/91‑1 (MQ=255)

                                 tatTTCATAGGTGATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTaaaa                                                           <  2:3289913/91‑1 (MQ=255)

                                  atTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAg                                                          <  1:1348348/91‑1 (MQ=255)

                                   tttCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGt                                                         >  2:3173006/1‑91 (MQ=255)

                                   tggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGt                                                         >  1:32422‑M1/56‑91 (MQ=255)

                                   tggtcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGt                                                         >  1:3447474‑M1/56‑91 (MQ=255)

                                     tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       <  1:1724857/91‑1 (MQ=255)

                                     tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       >  2:2161409/1‑91 (MQ=255)

                                     tCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTAc                                                       <  1:2418410/91‑1 (MQ=255)

                                      tcaacgtaaaattttcgatcatttaaatatcactattcaagacaaagaaaaaGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                      >  1:3066314‑M1/53‑91 (MQ=255)

                                      cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                      >  2:1650360/1‑91 (MQ=255)

                                      cATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACt                                                      <  2:91742/91‑1 (MQ=255)

                                       aTAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACtt                                                     <  1:704417/91‑1 (MQ=255)

                                        tAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttt                                                    >  1:3822462/1‑91 (MQ=255)

                                          ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                  >  2:2192875/1‑91 (MQ=255)

                                          ggTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACttttt                                                  <  1:2346890/91‑1 (MQ=255)

                                           gTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTc                                                 >  2:338469/1‑91 (MQ=255)

                                            tAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCt                                                <  2:193886/91‑1 (MQ=255)

                                             aaTTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCtt                                               <  2:2922734/91‑1 (MQ=255)

                                                  aattaaattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCt                                          <  2:1857189/91‑1 (MQ=255)

                                                       aattaGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAAt                                     >  2:341328/1‑91 (MQ=255)

                                                          taGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGt                                  <  1:2484627/91‑1 (MQ=255)

                                                          taGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGt                                  <  1:2635026/91‑1 (MQ=255)

                                                           aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                 <  2:1517325/91‑1 (MQ=255)

                                                           aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTg                                 >  1:905163/1‑91 (MQ=255)

                                                           aGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTCGAATAGTg                                 >  2:635982/1‑91 (MQ=255)

                                                            ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGa                                <  2:661073/91‑1 (MQ=255)

                                                            ggAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGa                                <  1:953320/91‑1 (MQ=255)

                                                               aCAATACCACTTAATATATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             <  2:3775065/91‑1 (MQ=255)

                                                               aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             <  2:1762961/91‑1 (MQ=255)

                                                               aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             <  2:3963484/91‑1 (MQ=255)

                                                               aCAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGatat                             <  2:3641004/91‑1 (MQ=255)

                                                                cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                            >  2:789526/1‑91 (MQ=255)

                                                                cAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAtt                            <  1:2715371/91‑1 (MQ=255)

                                                                 aaTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATAttt                           <  1:2060210/91‑1 (MQ=255)

                                                                  aTACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTa                          >  1:1558074/1‑91 (MQ=255)

                                                                    aCCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTaaa                        >  1:2999098/1‑91 (MQ=255)

                                                                    aCCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTCCTTTGTCTTGAATAGTGATATCTaaa                        >  2:2801807/1‑91 (MQ=255)

                                                                     ccACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAAt                       >  1:403639/1‑91 (MQ=255)

                                                                      cACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTAAAATg                      >  1:1483086/1‑91 (MQ=255)

                                                                       aCTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGa                     >  1:1071641/1‑91 (MQ=255)

                                                                        cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                    <  1:1576539/91‑1 (MQ=255)

                                                                        cTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGAt                    <  1:1576623/91‑1 (MQ=255)

                                                                            aTACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaa                >  1:2258833/1‑91 (MQ=255)

                                                                             tACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaaa               <  2:824057/91‑1 (MQ=255)

                                                                             tACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGaaa               >  2:2030101/1‑91 (MQ=255)

                                                                               cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt             >  1:2765232/1‑91 (MQ=255)

                                                                               cATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAt             >  1:765463/1‑91 (MQ=255)

                                                                                aTTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCTAGTAAAAGTACTTTGTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAAtt            <  2:181616/91‑1 (MQ=255)

                                                                                 ttCAGAAGTCTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCTAAAAttt           >  1:1976680/1‑91 (MQ=255)

                                                                                     gAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACg       <  2:1220911/91‑1 (MQ=255)

ACGCCACTTAATGGGTCAACGATTAGTTCATCATATTTCATAGGTAATTCAATTAAATTAGGAACAATACCACTTAATACATTCAGAAGTGTACTTTTACCGCAACCAGAAGGACCGAGTAAAAGTACTTTTTCTTTGTCTTGAATAGTGATATTTAAATGATCGAAAATTTTACGTTGAC  >  USA300TCH1516_ALE/1086872‑1087052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.