| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1119593 = | 186 (0.910) | 16 (0.090) | 6/136 | NT | 10.1% | intergenic (+12/+297) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein |
| ? | USA300TCH1516_ALE | 1119635 = | 126 (0.730) | intergenic (+54/+255) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein | |||||
GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1119694‑1119593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA > USA300TCH1516_ALE/1119635‑1119724 GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCA > 2:3627698/1‑91 AAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAG < 1:2593966/91‑1 AAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAG > 1:2756729/1‑91 AAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAG < 2:2599465/91‑1 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCCGCT > 2:86394/1‑91 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 1:1485521/91‑1 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 1:1888025/91‑1 AATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT > 2:3578055/1‑91 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC < 1:2264001/91‑1 TGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTC < 2:1806711/91‑1 GTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCT > 2:857468/1‑91 GTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCT > 2:857688/1‑91 TGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC > 1:312653/1‑91 TGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC < 2:1789501/91‑1 TGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC > 2:1623463/1‑91 TGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC < 1:272798/91‑1 GAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCT > 2:656582/1‑91 AAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTT > 1:2921709/1‑91 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAATTTTTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT > 2:2177517/1‑91 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT < 1:3149755/91‑1 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT > 1:2433912/1‑91 AAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT < 1:773745/91‑1 AAGTAACAGGAAACAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTT > 1:1030214/1‑91 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAT > 2:3303082/1‑91 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAT > 2:3303052/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:1791532/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:2049353/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:2456755/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATT > 1:2457051/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTT > 2:888820/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTT > 1:3171851/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTT > 2:888169/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTT > 2:888170/1‑91 CTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTT > 1:2945172/1‑91 CTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTT > 2:2915253/1‑91 CTAAGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACACTTT > 1:3192390/1‑91 AGCCACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATAGTTAAAACAGTGTGTCAATGCTATTATTTCCTGCTACTTTCACATTTTCtt > 2:2645202/1‑89 AGCAACTTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAA > 1:676572/1‑91 TTTCATCGCTCAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCT > 1:3546792/1‑91 AGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTAT < 2:153824/91‑1 AGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTCTCACATTTTCAAATTTCTAACTTGTTTAT > 1:3667465/1‑91 GCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATT < 1:1158056/91‑1 CTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTC > 2:3582302/1‑91 TTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCA < 1:3123780/91‑1 TTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCA < 2:526475/91‑1 TCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAG < 1:3761843/91‑1 CTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGA > 1:2463160/1‑91 CTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGA < 2:1661086/91‑1 CTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGA > 1:3116750/1‑91 TCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGAT < 2:1857520/91‑1 TCTTTTGGCATATAATAAAAGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGAT < 2:1595876/91‑1 CTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATA > 1:456598/1‑91 CTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATA > 2:3812780/1‑91 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 1:784959/91‑1 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 1:3717572/91‑1 TTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 2:874863/91‑1 TTTTGGCAAAAAATAAATTAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATAT < 2:874761/91‑1 TTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATT > 2:2601520/1‑91 TTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATT < 2:949068/91‑1 TGGCATATAATATTTTAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA < 2:864126/91‑1 TGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA < 2:863983/91‑1 TGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA > 1:829922/1‑91 GAAAATGTGAAAGTAACAGGAAATAATAGCATTTAAACACTTTTTCAAATATTATATGCCAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1119694‑1119593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAA > USA300TCH1516_ALE/1119635‑1119724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |