BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1119593 =	186 (0.910)	16 (0.090)	6/136	NT	10.1%	intergenic (+12/+297)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein
*	?	USA300TCH1516_ALE	1119635 =	126 (0.730)	16 (0.090)	6/136	NT	10.1%	intergenic (+54/+255)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein

Only 100 of 216 total aligned reads displayed.

AAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAAT  >  USA300TCH1516_ALE/1119545‑1119725

aaaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTg                                                                                            <  1:1449889/91‑1 (MQ=255)

 aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                                           >  2:683116/1‑91 (MQ=255)

   gCGTATCAAACAAAGGATGGAAGAAGACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTGCTCTTTTGGCa                                                                                         <  2:560677/91‑1 (MQ=255)

    cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                                        >  2:2848637/1‑91 (MQ=255)

    cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                                        >  2:1187232/1‑91 (MQ=255)

        tCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataa                                                                                    >  1:881128/1‑91 (MQ=255)

        tCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataa                                                                                    >  1:550214/1‑91 (MQ=255)

        tCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataa                                                                                    >  2:1407511/1‑91 (MQ=255)

        tCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataa                                                                                    >  1:2219912/1‑91 (MQ=255)

         caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                                   >  1:2950188/1‑91 (MQ=255)

          aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                                  <  2:3227865/91‑1 (MQ=255)

            acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                                >  1:832209/1‑91 (MQ=255)

            acaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAtt                                                                                <  2:2756837/91‑1 (MQ=255)

            acaaaTGAGGCAAGAAAACGAATAAGGGAACATAAGAAAAAAGTGGCTGAGCGATGATAGTTGCTTAGCTTCTCTTTTGGCATataatagt                                                                                <  2:1827316/91‑3 (MQ=255)

               aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                             <  1:3203478/91‑1 (MQ=255)

               aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                             <  2:776750/91‑1 (MQ=255)

               aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                             <  1:792987/91‑1 (MQ=255)

                 tgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaa                                                                           >  1:2743179/1‑91 (MQ=255)

                 tgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaa                                                                           >  1:1144362/1‑91 (MQ=255)

                 tgatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaa                                                                           >  1:203352/1‑91 (MQ=255)

                   ttgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         <  1:3061517/90‑1 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         >  1:1219649/1‑91 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         <  1:689101/91‑1 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         <  1:3061646/91‑1 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         >  1:2268055/1‑91 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                                         >  2:50586/1‑91 (MQ=255)

                   atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCCCAACTTCGCTCTTGGCATATAATATTTGaaaaa                                                                         >  2:867999/1‑91 (MQ=255)

                    tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                                        <  1:2369015/91‑1 (MQ=255)

                    tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                                        >  2:2792626/1‑91 (MQ=255)

                    tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                                        >  2:818869/1‑91 (MQ=255)

                     gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt                                                                       <  2:2616094/91‑1 (MQ=255)

                       aaGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgtgt                                                                     >  1:2593461/1‑91 (MQ=255)

                             aCGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAAt                                                               >  1:2705097/1‑91 (MQ=255)

                               gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                             >  2:2011505/1‑91 (MQ=255)

                               gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                             <  1:1359584/91‑1 (MQ=255)

                               gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                             <  2:2244692/91‑1 (MQ=255)

                                aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                                            >  2:1993835/1‑91 (MQ=255)

                                aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                                            >  2:3116365/1‑91 (MQ=255)

                                 ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCta                                                           >  2:2423511/1‑91 (MQ=255)

                                   aatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt                                                         <  1:3276630/91‑1 (MQ=255)

                                    atTTAACATAAGAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATGAAATATTTAAAAAAGTGTTTAAATGCtatta                                                        <  2:3021333/91‑1 (MQ=255)

                                     tttAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                                       <  2:232537/91‑1 (MQ=255)

                                     tttAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                                       <  1:1388290/91‑1 (MQ=255)

                                        aaCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTc                                                    <  2:2898209/91‑1 (MQ=255)

                                         aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                                   <  2:672047/91‑1 (MQ=255)

                                         aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                                   <  2:91469/91‑1 (MQ=255)

                                         aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                                   <  2:1287612/91‑1 (MQ=255)

                                         aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAAAAAAAAAAAAAGTGTTTAAATGCTATTATTTcc                                                   <  2:2713913/91‑1 (MQ=255)

                                             aataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGtt                                               <  1:1768746/91‑1 (MQ=255)

                                              ataaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTa                                              >  1:351500/1‑91 (MQ=255)

                                               taaAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTAc                                             <  1:433998/91‑1 (MQ=255)

                                                 AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTGTTTCCTGTTACtt                                           >  1:1030214‑M1/1‑91 (MQ=255)

                                                 AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                           <  1:3149755‑M1/91‑1 (MQ=255)

                                                 AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                           >  1:2433912‑M1/1‑91 (MQ=255)

                                                 AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                                           <  1:773745‑M1/91‑1 (MQ=255)

                                                    GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                                        >  1:312653‑M1/1‑91 (MQ=255)

                                                    GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                                        >  2:1623463‑M1/1‑91 (MQ=255)

                                                    GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                                        <  2:1789501‑M1/91‑1 (MQ=255)

                                                     AGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcac                                       >  2:857688‑M1/1‑91 (MQ=255)

                                                       aagctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                                     >  2:3303082‑M2/36‑91 (MQ=255)

                                                        agctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                    >  1:2457051‑M2/35‑91 (MQ=255)

                                                        AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                    >  2:3578055‑M1/1‑91 (MQ=255)

                                                        AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                    <  1:1888025‑M1/91‑1 (MQ=255)

                                                        AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                                    <  1:1485521‑M1/91‑1 (MQ=255)

                                                         gctaagcaactttcatcgctcagcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                                   >  2:888170‑M2/34‑91 (MQ=255)

                                                          CTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtttt                                  >  1:2756729‑M1/1‑91 (MQ=255)

                                                           TGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTc                                 >  2:3627698‑M1/1‑91 (MQ=255)

                                                            gAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                                <  2:2147010/91‑1 (MQ=255)

                                                            gAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                                <  1:1567215/91‑1 (MQ=255)

                                                            gAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                                <  1:2826689/91‑1 (MQ=255)

                                                             aGCGATGAACGTCGCTTAGCTTCTCTATTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGCTACTTTCACATCTTCaa                               >  2:929231/1‑91 (MQ=255)

                                                             aGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCaa                               <  1:1190474/91‑1 (MQ=255)

                                                             aGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCaa                               <  2:3735357/91‑1 (MQ=255)

                                                              gCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCaaa                              <  1:1973390/91‑1 (MQ=255)

                                                               cGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAt                             <  2:1507170/91‑1 (MQ=255)

                                                               cGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAt                             >  2:3069654/1‑91 (MQ=255)

                                                                gATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAtt                            >  1:3397363/1‑91 (MQ=255)

                                                                 aTGAAAGTTGCTTAGCTTCTCTTTTGGCATATAAAAATTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAttt                           <  2:437864/91‑1 (MQ=255)

                                                                     aaGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTaa                       <  1:2939102/91‑1 (MQ=255)

                                                                      aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                      >  2:1798533/1‑91 (MQ=255)

                                                                      aGTTGCTTAGCTGCTCTTTTGGCATATAAAAAAAAAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc                      <  2:156412/91‑1 (MQ=255)

                                                                       gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                     <  2:2480203/91‑1 (MQ=255)

                                                                       gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                     <  1:2634203/91‑1 (MQ=255)

                                                                       gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt                     >  1:3189726/1‑91 (MQ=255)

                                                                         tGCTTAGCTTCTCTTTTGGCATATAATATATGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTg                   <  2:1247435/91‑1 (MQ=255)

                                                                         tGCTTAGCTTCTCTTTTGGCATATAATATATGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTg                   <  2:2510286/91‑1 (MQ=255)

                                                                          gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt                  <  1:398581/91‑1 (MQ=255)

                                                                           cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt                 >  2:911080/1‑91 (MQ=255)

                                                                            ttAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGttt                >  1:1207357/1‑91 (MQ=255)

                                                                              agcttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTAt              <  2:153824‑M2/79‑1 (MQ=255)

                                                                                 ttctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCa           <  2:526475‑M2/82‑1 (MQ=255)

                                                                                  tctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAg          <  1:3761843‑M2/83‑1 (MQ=255)

                                                                                   ctcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGa         >  1:3116750‑M2/8‑91 (MQ=255)

                                                                                    tcttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGat        <  2:1857520‑M2/85‑1 (MQ=255)

                                                                                     cttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGata       >  2:3812780‑M2/6‑91 (MQ=255)

                                                                                      ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat      <  1:3717572‑M2/87‑1 (MQ=255)

                                                                                      ttttGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGatat      <  2:874863‑M2/87‑1 (MQ=255)

                                                                                         tGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTaa   <  2:863983‑M2/90‑1 (MQ=255)

                                                                                          ggCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAAt  <  2:1681077/91‑1 (MQ=255)

                                                                                          ggCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAAt  >  1:2912087/1‑91 (MQ=255)

AAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTATTCAGATATTAAT  >  USA300TCH1516_ALE/1119545‑1119725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.