| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1134027 | 174 (0.850) | 9 (0.050) | 6/132 | NT | 5.7% | intergenic (+21/+41) | coaD/USA300HOU_RS05620 | Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase |
| ? | USA300TCH1516_ALE | = 1134045 | 154 (0.920) | intergenic (+39/+23) | coaD/USA300HOU_RS05620 | Phosphopantetheine adenylyltransferase/Nicotinamide‑nucleotide adenylyltransferase | |||||
AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1133924‑1134027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagtattttaggATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATT < USA300TCH1516_ALE/1134045‑1133957 AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATA < 2:280826/91‑1AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATA > 2:3754682/1‑91AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATA > 2:3754785/1‑91AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATA > 2:471062/1‑91 AGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAA < 2:1332201/91‑1 AGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAA < 2:2842741/91‑1 AGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAA > 1:45823/1‑91 AGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAA > 2:1445254/1‑91 AGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAA < 2:1001226/91‑1 GAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAAC > 1:1283004/1‑91 GAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAAC > 2:3408176/1‑91 GAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAAC > 2:3407752/1‑91 GAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAAC < 2:3158445/91‑1 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT < 1:100753/91‑1 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT < 2:97839/91‑1 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT < 2:3747417/91‑1 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT < 1:114772/91‑1 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT > 1:2218638/1‑91 GTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTGCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGT < 2:2274382/91‑1 TTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTA < 1:1822513/91‑1 TGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAT > 1:1287033/1‑91 TGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTAT > 2:1496659/1‑91 GCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATT > 1:1122496/1‑91 GCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATT < 1:207282/91‑1 GCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATT > 2:3092844/1‑91 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT > 2:926721/1‑91 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT < 1:3696385/91‑1 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT < 1:3696498/91‑1 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT > 2:3707427/1‑91 CAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTT < 1:1503968/91‑1 CAGCTTATCGAGCAGATATTTCTGAATTCGTACCACCTTATCTTGAAAAGGCATTGAAGAAGAAATTGCAGTAATAAAACTAACAGTATTT > 2:3010931/1‑91 AGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTT > 2:2925479/1‑91 AGCTTATCGAGCAGATATTTCTGAATTCGTGCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTT < 2:1545527/91‑1 GCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTA > 2:3502733/1‑91 CTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAG > 2:256914/1‑91 CTTATCGAGCAGATATTTCTGAATTCGTTCCACCTCCTGTTGAAAAGGCATTGACGAAGCCATCTCAGTAATAAAAATAACCGTATTTTAG > 2:1778762/1‑91 TGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAA < 1:3022401/91‑1 GAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAAC < 2:1829193/91‑1 ATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCT < 2:507671/91‑1 ATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCT < 2:560487/91‑1 ATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCT < 2:2320866/91‑1 CGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAA < 1:857318/91‑1 TATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTAT < 2:1410444/91‑1 TATGTTGAAAAGGCATGGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTAT < 2:3776055/91‑1 GTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTT < 1:1815170/91‑1 AACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAG > 2:1707979/1‑91 AACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAG > 1:2151892/1‑91 ACAGTCTTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTCGAATGCCTTTTTTACATAAGG > 2:3952681/1‑91 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:1433717/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG > 1:3494123/1‑91 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:3263061/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG > 2:1805727/1‑91 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 2:3688243/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:1433618/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 2:930280/91‑1 ACAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGG < 1:910327/91‑1 CAGTATTTTAGGATTGTAAACCATGATAAGCCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGT < 1:1305383/91‑1 CAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGT > 2:563668/1‑91 CAGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGT < 2:269903/91‑1 AGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTG < 1:3023031/91‑1 AGTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTG < 1:3714851/91‑1 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:3737716/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:2978457/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:2171097/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:2170982/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:806426/1‑91 GTATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGG > 2:176907/1‑91 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA < 1:3520608/91‑1 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA < 1:1676019/91‑1 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA < 1:3111073/91‑1 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA < 1:1676005/91‑1 TATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGA < 1:1676054/91‑1 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA < 2:991365/91‑1 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:1922375/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:1922491/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA > 1:3102240/1‑91 ATTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAA < 1:3758378/91‑1 TTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAAC < 2:1831890/91‑1 TTTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAAC < 1:436696/91‑1 TTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACG < 2:2274312/91‑1 TTTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACG > 1:836326/1‑91 TTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGA > 1:2990752/1‑91 TTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGA > 2:664408/1‑91 TTAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGA < 2:1244876/91‑1 TAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAA < 1:3570698/91‑1 TAGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAA < 1:3805450/91‑1 AGGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAAT > 1:3869962/1‑91 GGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATT > 1:1767574/1‑91 GGATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATT > 1:333487/1‑91 AAGAAGTTGCAGCTTATCGAGCAGATATTTCTGAATTCGTTCCACCTTATGTTGAAAAGGCATTGAAGAAGAAATTTAAGTAATAAAAATAACAGTATTTTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1133924‑1134027‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacagtattttaggATTGTAAACCATGATAAACCTAAAATACTGTTATTTTTATTACTTAAATTTCTTCTTCAATGCCTTTTCAACATAAGGTGGAACGAATT < USA300TCH1516_ALE/1134045‑1133957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |