| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1149421 = | 217 (1.070) | 11 (0.060) | 5/138 | NT | 5.7% | intergenic (+7/+164) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII |
| ? | USA300TCH1516_ALE | 1149475 = | 179 (1.020) | intergenic (+61/+110) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII | |||||
TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149521‑1149421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATA > USA300TCH1516_ALE/1149475‑1149563 TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATA < 2:1184074/91‑1TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATA < 2:1758023/91‑1TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATA < 2:1758041/91‑1 TTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATAC < 2:1358615/91‑1 TGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACA < 2:1260276/91‑1 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT < 1:1111466/91‑1 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT < 1:1111617/91‑1 GACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACAT < 2:1259304/91‑1 ACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATG < 1:57643/91‑1 ACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATG < 2:2515314/91‑1 CTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG < 1:1080514/91‑1 CTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG < 2:1390926/91‑1 CTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG < 1:2762516/91‑1 CTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG > 2:587429/1‑91 CTTTTTAAATGCATTGGAACCAAATGGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGG < 2:395218/91‑1 TTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGG > 2:2682636/1‑91 TTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGG > 2:1094067/1‑91 TTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGG > 2:694534/1‑91 TTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGG > 1:1998822/1‑91 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 1:28124/91‑1 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 2:1930491/91‑1 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT > 2:3368162/1‑91 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 1:2430093/91‑1 TTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGT < 1:2430500/91‑1 TTAAATGCATTGGAAGCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATAAATCTACTTCAGATATCCTTATACATGGGGTT > 1:3372297/1‑91 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 2:1927757/91‑1 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 2:3369146/91‑1 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT > 2:188112/1‑91 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 2:1927876/91‑1 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT > 1:3456789/1‑91 TTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 2:2747593/91‑1 TTAAATGCAGTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCGTGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTT < 2:1929379/91‑1 CATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGT > 2:584969/1‑91 CATGTTAGGGATATCAATCTACTTCAGATATCCTTA‑ACATGGGGTTTTATTTTTTGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTC > 2:3804508/1‑91 ATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGCTCACCAATTTGGTTCCAATGCATTTAAAAAGTC > 1:3507614/1‑91 GTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAA > 2:1121402/1‑91 GTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAA > 1:1532506/1‑91 TTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAA > 2:3310235/1‑91 TTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAA > 2:2836739/1‑91 TTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAA > 2:1791118/1‑91 TTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAA > 1:1659588/1‑91 AGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCCATTTGGTTCCACTGCATTTAAAAAGTCAAAGt > 2:3926205/1‑90 AGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGA > 2:1939047/1‑91 ACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCAC > 1:541433/1‑91 ACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCAC > 1:2448200/1‑91 ACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCAC < 1:3359718/91‑1 CATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACA > 2:2048170/1‑91 ATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAA > 2:3726978/1‑91 ATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAA > 1:3641030/1‑91 ATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAA > 2:3773329/1‑91 TGGTGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC < 1:3194563/91‑1 TGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAAC < 2:1360705/91‑1 GGGGTTTTATTTTTTTTTTTTCTTATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 2:2703855/1‑91 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 2:3338207/1‑91 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 1:3042213/1‑91 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 1:2133909/1‑91 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT > 2:628401/1‑91 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT < 1:535408/91‑1 GGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACT < 2:1242080/91‑1 GGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTG > 2:96450/1‑91 GGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTG > 1:67261/1‑91 GGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTG > 1:67035/1‑91 GGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTG > 1:1257915/1‑91 GGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGC < 1:2487906/91‑1 GGTTTTACTTTTGGGTTCACCAATTTGGTTCCAATGCATTAAAAAAGCCAAAGAGGAACAGCGGAATCCAGATGATACTTCGCACAACTGC > 2:3678220/1‑91 GTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCCTTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCA < 2:3120874/91‑1 GTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCA > 2:3861417/1‑91 GTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCA > 1:2549852/1‑91 TTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAT < 1:3734601/91‑1 TTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATA > 1:1099632/1‑91 TTTGACTTTTTAAATGCATTGGAACCAAATTGGTGAACCCAAAAATAAAACCCCATGTTAGGGATATCAATCTACTTCAGATATCCTTATACATGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149521‑1149421‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATA > USA300TCH1516_ALE/1149475‑1149563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |