BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1149421 =	217 (1.070)	11 (0.060)	5/138	NT	5.7%	intergenic (+7/+164)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII
*	?	USA300TCH1516_ALE	1149475 =	179 (1.020)	11 (0.060)	5/138	NT	5.7%	intergenic (+61/+110)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII

Only 100 of 273 total aligned reads displayed.

TTAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAA  >  USA300TCH1516_ALE/1149385‑1149565

ttAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGtttt                                                                                            >  1:1741429/1‑91 (MQ=255)

 tAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTa                                                                                           >  2:3742148/1‑91 (MQ=255)

   aTTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtt                                                                                         <  2:1104668/91‑1 (MQ=255)

    ttGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAttt                                                                                        <  1:120472/91‑1 (MQ=255)

    ttGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAttt                                                                                        <  1:955911/91‑1 (MQ=255)

     tGAACAAGGTGCTGTTATTAGATAATGATTTAGACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtttt                                                                                       <  2:263783/91‑1 (MQ=255)

     tGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtttt                                                                                       >  2:648284/1‑91 (MQ=255)

     tGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAtttt                                                                                       <  2:319678/91‑1 (MQ=255)

      gAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAttttt                                                                                      >  1:3315574/1‑91 (MQ=255)

      gAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTAttttt                                                                                      >  1:2267338/1‑91 (MQ=255)

       aaCAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTg                                                                                     <  2:2271620/91‑1 (MQ=255)

       aaCAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTg                                                                                     >  2:2559413/1‑91 (MQ=255)

        aCAAGGTGCTGCTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATACCTAACATGGGGTCTTATTTCTgg                                                                                    >  2:753135/1‑91 (MQ=255)

         cAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTggg                                                                                   <  1:803150/91‑1 (MQ=255)

           aGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGtt                                                                                 >  1:1828961/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGttt                                                                                >  2:3933124/1‑90 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                <  1:3916562/91‑1 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                >  1:2872488/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                <  2:3909704/91‑1 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                >  1:380268/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                >  1:3577581/1‑91 (MQ=255)

            ggTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTc                                                                                >  2:3654648/1‑91 (MQ=255)

             gTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCa                                                                               >  1:2589544/1‑91 (MQ=255)

               gCTGTTATTAGATAATGATTTACCCCCCATGTATAAGGATATCCGAAGTAGATTGATATCCCTAGCATGGGGTTTTATTTTTGGGTTCAcc                                                                             <  2:1863723/91‑1 (MQ=255)

                cTGTTATTAGATAATGATTTATACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCa                                                                            <  2:2446981/91‑1 (MQ=255)

                cTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCa                                                                            <  2:594335/91‑1 (MQ=255)

                 tGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCaa                                                                           >  2:2160457/1‑91 (MQ=255)

                 tGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTCGGGTTCACCaa                                                                           >  2:675684/1‑91 (MQ=255)

                    tattaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAAttt                                                                        <  1:3582830/91‑1 (MQ=255)

                     attaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTg                                                                       >  2:852651/1‑91 (MQ=255)

                     attaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTg                                                                       >  2:3534835/1‑91 (MQ=255)

                      ttaGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGCTTTATTTTTGGGTTCACCAATTTgg                                                                      >  1:509475/1‑91 (MQ=255)

                        aGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGtt                                                                    >  2:2730005/1‑91 (MQ=255)

                          aTAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTcc                                                                  >  2:1014992/1‑91 (MQ=255)

                           tAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAAAATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCa                                                                 >  2:194262/1‑91 (MQ=255)

                            aaTGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCaa                                                                >  2:3151852/1‑91 (MQ=255)

                            aaTGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCaa                                                                >  2:2395657/1‑91 (MQ=255)

                               gATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGc                                                             >  1:1559036/1‑91 (MQ=255)

                                aTTTAAACCCCATGTATAAGGATATCTGGAGTAGGTTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCa                                                            <  1:1401640/91‑1 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGGTATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                          >  2:2476749/1‑91 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                          <  2:2834269/91‑1 (MQ=255)

                                  ttAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAtt                                                          <  2:3866923/91‑1 (MQ=255)

                                   tAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCAttt                                                         >  2:1066849/1‑91 (MQ=255)

                                     AACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                       >  1:3456789‑M1/1‑91 (MQ=255)

                                     AACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                       <  2:1927876‑M1/91‑1 (MQ=255)

                                     AACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaa                                                       <  2:3369146‑M1/91‑1 (MQ=255)

                                      ACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaa                                                      <  1:2430500‑M1/91‑1 (MQ=255)

                                      ACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaa                                                      <  1:28124‑M1/91‑1 (MQ=255)

                                      ACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaa                                                      <  2:1930491‑M1/91‑1 (MQ=255)

                                        CCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTaaaaa                                                    >  2:2682636‑M1/1‑91 (MQ=255)

                                         CCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCCATTTGGTTCCAATGCATTTAAAAAg                                                   <  2:395218‑M1/91‑1 (MQ=255)

                                         CCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAg                                                   <  1:1080514‑M1/91‑1 (MQ=255)

                                          catgttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGt                                                  >  2:584969‑M2/49‑91 (MQ=255)

                                          CATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGt                                                  <  1:57643‑M1/91‑1 (MQ=255)

                                           catgttagggatatcaatctacttcagatatccttaacatggggtttTATTTTTTGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTc                                                 >  2:3804508‑M2/48‑91 (MQ=255)

                                           ATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTc                                                 <  2:1259304‑M1/91‑1 (MQ=255)

                                             GTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaa                                               <  2:1358615‑M1/91‑1 (MQ=255)

                                              ttagggatatcaatctacttcagatatccttatacatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaaa                                              >  2:1791118‑M2/45‑91 (MQ=255)

                                              TATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCaaa                                              <  2:1758023‑M1/91‑1 (MQ=255)

                                                taAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCACTGCACTTAAAAAGTCAAtga                                            >  2:2291185/1‑91 (MQ=255)

                                                taAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAaga                                            <  1:2316180/91‑1 (MQ=255)

                                                 aaGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAagag                                           <  2:2913921/91‑1 (MQ=255)

                                                 aaGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAagag                                           <  1:3486558/91‑1 (MQ=255)

                                                  aGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAgg                                          >  2:3562905/1‑91 (MQ=255)

                                                  aGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAgg                                          >  2:2886491/1‑91 (MQ=255)

                                                   ggATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAATAGGa                                         <  1:3122668/91‑1 (MQ=255)

                                                   ggATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGa                                         >  2:48745/1‑91 (MQ=255)

                                                      tatCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACa                                      >  1:2970046/1‑91 (MQ=255)

                                                      tatCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACa                                      >  2:1582522/1‑91 (MQ=255)

                                                        tCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGc                                    >  1:984336/1‑91 (MQ=255)

                                                        tCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGc                                    >  1:1204348/1‑91 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                                  <  2:2122382/91‑1 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                                  >  1:268052/1‑91 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                                  >  1:631776/1‑91 (MQ=255)

                                                          tGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCgg                                  >  1:1987119/1‑91 (MQ=255)

                                                           gAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTT‑AAAAGTCAAAGAGGAACAGCGGaa                                >  2:1309823/1‑91 (MQ=255)

                                                            aaGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGaa                                >  1:2718534/1‑91 (MQ=255)

                                                              gTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATa                              <  1:2007272/91‑1 (MQ=255)

                                                              gTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATa                              >  1:118849/1‑91 (MQ=255)

                                                              gTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATa                              <  2:115169/91‑1 (MQ=255)

                                                                aGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACa                            >  1:448277/1‑91 (MQ=255)

                                                                 gATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAg                           >  1:2353545/1‑91 (MQ=255)

                                                                  aTTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATATAga                          >  1:3191047/1‑91 (MQ=255)

                                                                  aTTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAga                          <  1:1099822/91‑1 (MQ=255)

                                                                  aTTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAga                          <  2:1438552/91‑1 (MQ=255)

                                                                   ttGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAgat                         >  1:223754/1‑91 (MQ=255)

                                                                        atCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGc                    >  1:1688095/1‑91 (MQ=255)

                                                                         tCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCt                   <  1:408688/91‑1 (MQ=255)

                                                                               acatggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGcac             <  1:3359718‑M2/80‑1 (MQ=255)

                                                                                catggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGcaca            >  2:2048170‑M2/11‑91 (MQ=255)

                                                                                 atggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACaa           >  2:3773329‑M2/10‑91 (MQ=255)

                                                                                 atggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACaa           >  1:3641030‑M2/10‑91 (MQ=255)

                                                                                 atggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACaa           >  2:3726978‑M2/10‑91 (MQ=255)

                                                                                   ggggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACt         >  2:3338207‑M2/8‑91 (MQ=255)

                                                                                    gggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTg        >  1:67035‑M2/7‑91 (MQ=255)

                                                                                    gggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTg        >  1:1257915‑M2/7‑91 (MQ=255)

                                                                                     ggtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGc       <  1:2487906‑M2/86‑1 (MQ=255)

                                                                                      gtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCCTTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCa      <  2:3120874‑M2/87‑1 (MQ=255)

                                                                                      gtttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCa      >  2:3861417‑M2/5‑91 (MQ=255)

                                                                                       tttTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCAt     <  1:3734601‑M2/88‑1 (MQ=255)

TTAATTGAACAAGGTGCTGTTATTAGATAATGATTTAAACCCCATGTATAAGGATATCTGAAGTAGATTGATATCCCTAACATGGGGTTTTATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAA  >  USA300TCH1516_ALE/1149385‑1149565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.