| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1149564 = | 173 (0.850) | 21 (0.120) | 11/142 | NT | 11.4% | intergenic (+150/+21) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII |
| ? | USA300TCH1516_ALE | 1149598 = | 174 (0.960) | coding (926/939 nt) | rnhC | Ribonuclease HIII | |||||
CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149662‑1149564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > USA300TCH1516_ALE/1149598‑1149687 CTTTCGCGTTTAGATAACATAAAAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:3210977/91‑1CTTTCACGTTTATATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:2256666/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAGAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 1:653788/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:1520843/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 2:1520851/91‑1CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTA < 1:3557884/91‑1 TTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAG > 1:1024408/1‑91 TTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAG > 1:1024369/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG < 2:3389490/91‑1 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG > 2:3064919/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG > 2:3064777/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG > 2:3064712/1‑91 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG < 2:2912562/91‑1 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG < 2:358197/91‑1 TCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAG < 2:2064147/91‑1 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT > 2:3507614/1‑91 CGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCT > 2:2150282/1‑91 GTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTT < 2:2889768/91‑1 GTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTT > 1:1260276/1‑91 TTTAGATAGCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT < 2:3741086/91‑1 TTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT < 1:528689/91‑1 TAGATACCATTTCAAAAAAGCATTCTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTACAGGCTTcta > 2:197781/1‑88 CGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAAT > 1:3728523/1‑91 CGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAAT > 1:3728376/1‑91 CCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGA > 1:733273/1‑91 TTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCT > 2:2629020/1‑91 AAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAA > 1:2048434/1‑91 AAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAAT‑GTATCTACAC > 2:824385/1‑91 AAGCCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAAC > 1:1710739/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 2:3303498/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 1:756015/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 2:2893475/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 2:2893272/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 1:3717330/1‑91 CCTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTG > 1:3524015/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGA > 2:2144212/1‑91 CTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAA > 1:2568678/1‑91 CTTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAA > 1:1483250/1‑91 TTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAG > 2:2514936/1‑91 TTTGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAG > 1:3045098/1‑91 TGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAC > 1:3735038/1‑91 TGATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAC > 1:3738429/1‑91 GATTTTTAATCATTAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACC > 2:54830/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGGAAGACCGTATTTTTTTATAA > 1:2282881/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 1:820773/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA < 2:3820787/91‑1 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 1:2493265/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 2:604277/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 2:2965652/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 1:429428/1‑91 AGAGGCTTTAAAATTTTTTGGGCTTTCTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAA > 2:2244985/1‑91 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 2:2872488/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 1:959730/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT < 2:3378683/91‑1 GAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAT > 2:2475989/1‑91 GGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTT > 1:1678178/1‑91 GGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTT < 1:86246/91‑1 GGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTT < 2:1614782/91‑1 GCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTT < 1:2845639/91‑1 GCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTCTTTTAATGTTATCTAAACGTGAAAGCCCGTATTCTTTTATCATTTT > 2:3281646/1‑91 CTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTG < 2:3871150/91‑1 CTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTGTTATAATTTTG > 1:3580311/1‑91 TTTAAAAATTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGG < 2:3518753/91‑1 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTTGCG > 2:1413168/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG < 1:2843555/91‑1 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:333298/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 2:2828136/1‑91 TAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > 1:1425802/1‑91 CTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAAAATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1149662‑1149564‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCG > USA300TCH1516_ALE/1149598‑1149687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |