BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1149564 =	173 (0.850)	21 (0.120)	11/142	NT	11.4%	intergenic (+150/+21)	pheT_1/rnhC	Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII
*	?	USA300TCH1516_ALE	1149598 =	174 (0.960)	21 (0.120)	11/142	NT	11.4%	coding (926/939 nt)	rnhC	Ribonuclease HIII

Only 100 of 275 total aligned reads displayed.

TTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCGG  >  USA300TCH1516_ALE/1149508‑1149688

tttAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTa                                                                                            <  1:709588/91‑1 (MQ=255)

tttAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTa                                                                                            <  1:3698172/91‑1 (MQ=255)

 ttAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCAAATAATGATAAAAAATCAAAGAGGCTTTaa                                                                                           <  2:824850/91‑1 (MQ=255)

   aaaaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTaaaa                                                                                         >  2:45118/1‑91 (MQ=255)

   aaaaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTaaaa                                                                                         >  2:2626929/1‑91 (MQ=255)

   aaaaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCACACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTaaaa                                                                                         >  2:3246418/1‑91 (MQ=255)

     aaaGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAtt                                                                                       >  1:3313763/1‑91 (MQ=255)

        gTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAAttttt                                                                                    >  2:3347610/1‑91 (MQ=255)

         tCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTGTAATGATTAAAAATCAAAGAGGCTTTAAAAtttttt                                                                                   <  1:1750937/91‑1 (MQ=255)

           aaaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTgg                                                                                 <  1:3558799/91‑1 (MQ=255)

            aaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTggg                                                                                >  1:683291/1‑91 (MQ=255)

            aaGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTggg                                                                                >  2:1290130/1‑91 (MQ=255)

             agagGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGc                                                                               >  1:1458019/1‑91 (MQ=255)

              gagGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCt                                                                              >  1:3905966/1‑91 (MQ=255)

               agGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCtt                                                                             <  1:887963/91‑1 (MQ=255)

                   aCAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTc                                                                         <  2:3690268/91‑1 (MQ=255)

                    cAGCGGAATACGGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                                                        >  2:2872762/1‑91 (MQ=255)

                    cAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                                                        <  1:3522125/91‑1 (MQ=255)

                    cAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                                                        >  1:2009350/1‑91 (MQ=255)

                    cAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCa                                                                        >  1:860779/1‑91 (MQ=255)

                     aGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCAc                                                                       >  2:1539019/1‑91 (MQ=255)

                     aGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCAc                                                                       >  1:791727/1‑91 (MQ=255)

                      gCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTTGGCTTTTTCACg                                                                      >  2:3594214/1‑91 (MQ=255)

                      gCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACg                                                                      <  1:2608754/91‑1 (MQ=255)

                      gCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACg                                                                      >  2:3074012/1‑91 (MQ=255)

                        ggAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAt                                                                    <  2:976590/91‑1 (MQ=255)

                        ggAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAt                                                                    <  2:870761/91‑1 (MQ=255)

                        ggAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAt                                                                    <  1:2649006/91‑1 (MQ=255)

                          aaTACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAttt                                                                  >  1:1616143/1‑91 (MQ=255)

                          aaTACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCATTTTCACGAttt                                                                  >  2:3294668/1‑91 (MQ=255)

                           aTACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAtttt                                                                 <  2:2353533/91‑1 (MQ=255)

                            tACAGATGATGCTTCGCACAACTGCATAAAATCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGAttttt                                                                <  2:949968/91‑1 (MQ=255)

                             aCAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTa                                                               <  2:2670157/91‑1 (MQ=255)

                               aGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaa                                                             <  2:3170871/91‑1 (MQ=255)

                               aGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaa                                                             >  2:179731/1‑91 (MQ=255)

                                gatgatGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTaaaa                                                            <  1:1458080/91‑1 (MQ=255)

                                 cgtgaaaaagcccaaaaaattttaaagcctctttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAAt                                                           >  1:3728376‑M2/58‑91 (MQ=255)

                                  tgatgCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATg                                                          <  2:3574494/91‑1 (MQ=255)

                                     tgCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCtt                                                       <  2:3007856/91‑1 (MQ=255)

                                      gCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTGTTTGGGCTTTTTCACGATTTTTAAAATGCttt                                                      <  2:3880926/91‑1 (MQ=255)

                                        ttCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCttttt                                                    <  2:1828961/91‑1 (MQ=255)

                                        ttCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCttttt                                                    >  1:1549271/1‑91 (MQ=255)

                                         tCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCtttttt                                                   >  1:2057720/1‑91 (MQ=255)

                                          cGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGTCTTTTTCACGATTTTTAAAATGCTTTTTTg                                                  >  2:1147139/1‑91 (MQ=255)

                                          cGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTg                                                  >  1:2210119/1‑91 (MQ=255)

                                              caACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTATTTGAAAt                                              >  2:3439029/1‑91 (MQ=255)

                                                aCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATgg                                            >  1:3811574/1‑91 (MQ=255)

                                                aCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATgg                                            >  1:3012671/1‑91 (MQ=255)

                                                aCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATgg                                            <  1:2154076/91‑1 (MQ=255)

                                                aCTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATgg                                            >  2:2266081/1‑91 (MQ=255)

                                                  tGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTa                                          >  1:2093307/1‑91 (MQ=255)

                                                   gCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTAt                                         <  1:3064710/91‑1 (MQ=255)

                                                   gCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTAt                                         <  1:3064874/91‑1 (MQ=255)

                                                    cATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATc                                        >  2:1623302/1‑91 (MQ=255)

                                                    cATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATc                                        >  1:116109/1‑91 (MQ=255)

                                                    cATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATc                                        <  1:3264841/91‑1 (MQ=255)

                                                      tagAAGCCTGTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAGAATGCTTTTTTGAAATGGTATCTa                                      >  2:197781‑M1/4‑91 (MQ=255)

                                                      tAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAACATGCATTTTTGTAATGGTATCTa                                      >  2:1174859/1‑91 (MQ=255)

                                                        AAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTaaa                                    <  1:528689‑M1/91‑1 (MQ=255)

                                                         aagcctctttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAAc                                   >  1:1710739‑M2/34‑91 (MQ=255)

                                                            cctctttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTg                                >  1:756015‑M2/31‑91 (MQ=255)

                                                            cctctttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTg                                >  2:2893272‑M2/31‑91 (MQ=255)

                                                             CTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGa                               >  2:3064712‑M1/1‑91 (MQ=255)

                                                             CTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGa                               <  2:3389490‑M1/91‑1 (MQ=255)

                                                               ctttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGaaa                             >  1:2568678‑M2/28‑91 (MQ=255)

                                                               CTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGaaa                             >  1:1024369‑M1/1‑91 (MQ=255)

                                                                tttgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAg                            >  2:2514936‑M2/27‑91 (MQ=255)

                                                                TAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTTTTATGTTATCTAAACGCGAAAg                            <  2:3210977‑M1/91‑1 (MQ=255)

                                                                TAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAg                            <  2:1520843‑M1/91‑1 (MQ=255)

                                                                 aaTGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGa                           >  1:1026755/1‑91 (MQ=255)

                                                                  tgatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAc                          >  1:3735038‑M2/25‑91 (MQ=255)

                                                                  aTGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAc                          >  1:2314547/1‑91 (MQ=255)

                                                                  aTGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAc                          <  1:2945294/91‑1 (MQ=255)

                                                                  aTGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAc                          <  2:219874/91‑1 (MQ=255)

                                                                   tGATTAAAAAGCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAcc                         <  2:277285/91‑1 (MQ=255)

                                                                   gatttttaatcattagaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGAcc                         >  2:54830‑M2/24‑91 (MQ=255)

                                                                    gATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCg                        <  1:128618/91‑1 (MQ=255)

                                                                       tAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAt                     >  2:2114861/1‑91 (MQ=255)

                                                                          aaaTCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAATATTCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAtttt                  >  2:663375/1‑91 (MQ=255)

                                                                          aaaTCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAtttt                  >  1:1934397/1‑91 (MQ=255)

                                                                          aaaTCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAtttt                  >  2:2468554/1‑91 (MQ=255)

                                                                           aaTCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAttttt                 <  1:1886278/91‑1 (MQ=255)

                                                                            aTCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAtttttt                <  1:1578498/91‑1 (MQ=255)

                                                                             tCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTAttttttt               >  1:3665739/1‑91 (MQ=255)

                                                                             tCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTAAAATGGTATCTAAACGTGAAAGACCGTAttttttt               >  1:2860304/1‑91 (MQ=255)

                                                                              cAAAGAGGCTTTAAAATGTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTta              <  1:3389745/91‑1 (MQ=255)

                                                                                aaGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTtata            >  2:1404544/1‑91 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           >  1:2493265‑M2/10‑91 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           >  1:429428‑M2/10‑91 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           >  2:2965652‑M2/10‑91 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           >  1:820773‑M2/10‑91 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           <  2:3820787‑M2/82‑1 (MQ=255)

                                                                                 agaggctttAAAATTTTTTGGGCTTTCTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATaa           >  2:2244985‑M2/10‑91 (MQ=255)

                                                                                    ggctttAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAAttt        <  2:1614782‑M2/85‑1 (MQ=255)

                                                                                       tttAAAAATTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTgg     <  2:3518753‑M2/88‑1 (MQ=255)

                                                                                         tAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCg   >  1:1425802‑M2/2‑91 (MQ=255)

                                                                                         tAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCg   <  1:2843555‑M2/90‑1 (MQ=255)

                                                                                         tAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCg   >  2:2828136‑M2/2‑91 (MQ=255)

                                                                                         tAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCg   >  1:333298‑M2/2‑91 (MQ=255)

                                                                                          aaaaTTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTggcgg  >  2:1065025/1‑91 (MQ=255)

TTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTAATGATTAAAAATCAAAGAGGCTTTAAAATTTTTTGGGCTTTTTCACGATTTTTAAAATGCTTTTTTGAAATGGTATCTAAACGTGAAAGACCGTATTTTTTTATAATTTTGGCGG  >  USA300TCH1516_ALE/1149508‑1149688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.