| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1149572 | 183 (0.900) | 19 (0.110) | 9/142 | NT | 10.2% | intergenic (+158/+13) | pheT_1/rnhC | Phenylalanine‑‑tRNA ligase beta subunit/Ribonuclease HIII |
| ? | USA300TCH1516_ALE | = 1149588 | 174 (0.960) | coding (936/939 nt) | rnhC | Ribonuclease HIII | |||||
TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1149475‑1149572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcctctTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATTGG < USA300TCH1516_ALE/1149588‑1149500 TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATTCAGATGATGCTTCGCACAACTGCATAAA > 2:3422228/1‑91TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAA < 1:1203553/91‑1TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAA < 2:3361045/91‑1TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAA < 1:1779606/91‑1 ATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATCCAGCTGATGCTTCGCACAACTGCATAAAA > 2:282958/1‑91 ATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAA < 2:1659588/91‑1 ATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAA > 2:282989/1‑91 TTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGC < 2:507605/91‑1 TTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGC < 2:507519/91‑1 TTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGC < 2:507585/91‑1 TTTTGGGTGCACCAATTTGGTTCCAGTGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACCGATGATGCTTCGCACAACTGCATAAAAGC < 2:3434180/91‑1 TTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCC < 2:1366836/91‑1 TTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCC < 1:3261120/91‑1 TTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCT < 1:1775106/91‑1 TTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCT > 2:2929736/1‑91 TTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCT < 1:361996/91‑1 TTGGCTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAACCCT > 1:3119648/1‑91 ATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTA < 1:3942785/91‑1 TGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATC < 1:1288107/91‑1 GTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCAT < 1:2666664/91‑1 TTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATT < 1:1365380/91‑1 cgAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAG < 2:2933515/89‑1 CCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAG < 2:1787408/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 1:2825899/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 1:2825872/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 1:769899/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 1:2229818/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 2:1514539/91‑1 CAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGA < 1:2414497/91‑1 AATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAG < 1:2921646/91‑1 AATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAG < 1:3657513/91‑1 AATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAG < 1:2588106/91‑1 AATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAG < 2:28124/91‑1 ATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAGG < 1:1118709/91‑1 ATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAGG < 1:1118688/91‑1 GAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGA < 1:171673/91‑1 AAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAAT < 2:2746482/91‑1 AAAGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAAT > 1:95062/1‑91 AGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC > 2:268052/1‑91 AGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC < 2:342416/91‑1 AGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC < 1:2962144/91‑1 AGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC < 1:1134902/91‑1 AGCCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGC < 1:2961333/91‑1 CTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATT > 2:313163/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATT > 2:313179/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATT > 1:1831419/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATT > 2:3689473/1‑91 CTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTACCTCTTTGACTTTTTAAATGCATT > 2:3689430/1‑91 CTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATTGG < 1:2801431/91‑1 TATTTTTGGGTTCACCAATTTGGTTCCAATGCATTTAAAAAGTCAAAGAGGAACAGCGGAATACAGATGATGCTTCGCACAACTGCATAAAAGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1149475‑1149572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcctctTTGATTTTTAATCATTAGAGGCTTTTATGCAGTTGTGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGACTTTTTAAATGCATTGG < USA300TCH1516_ALE/1149588‑1149500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |