| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1168159 | 209 (1.030) | 20 (0.110) | 9/140 | NT | 8.7% | intergenic (+15/+638) | scn_2/USA300HOU_RS05810 | Staphylococcal complement inhibitor/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1168177 | 235 (1.320) | intergenic (+33/+620) | scn_2/USA300HOU_RS05810 | Staphylococcal complement inhibitor/hypothetical protein | |||||
GAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168060‑1168159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < USA300TCH1516_ALE/1168177‑1168088 GAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATA > 1:1155177/1‑91 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA > 2:1301745/1‑91 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA < 2:271649/91‑1 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA < 2:272031/91‑1 AAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAA < 2:272543/91‑1 AAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 2:1196851/91‑1 AAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 1:2458698/91‑1 AAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 2:78081/91‑1 AAAATGATTTCGTATCAATGGCTGATGCTAAAGATGAAAAAAAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAA < 2:1792639/91‑1 AAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAA > 1:3709577/1‑91 AAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAA < 1:224098/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAGAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:1459828/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAt > 2:1503734/1‑90 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:1423711/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 2:3886163/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:360920/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:360541/91‑1 AATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAAC < 1:3731428/91‑1 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACA > 1:3074541/1‑91 ATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACA > 1:3209561/1‑91 TGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAG > 2:3857840/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 2:1748862/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:883906/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:883916/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 2:891964/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 2:1967653/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:1026633/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:1547351/1‑91 GATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGG > 1:1286016/1‑91 ATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGT > 2:1673453/1‑91 TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT > 1:3275959/1‑91 TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT > 1:3314649/1‑91 TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT < 2:1062973/91‑1 CTGATGCTAAAGTTGCAGTAGAAAAAATATACCAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTG < 1:3385229/91‑1 CTGATGCTAAAGTTGCAGTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTG < 1:3386018/91‑1 ATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCT < 2:3081722/91‑1 ATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTAGTCT < 1:3115941/91‑1 TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 1:644753/91‑1 TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 1:3521852/91‑1 TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 2:2149335/91‑1 TGCTAAAGTTACAATAGAAAAAATATACAAAGAAATTGATGAAATCATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTC < 2:3781574/91‑1 cAAAGTTGCATTAGAAAAAATATACAAAGAAATTGACGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAAC < 2:3925289/90‑1 TAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAAC < 1:2105811/91‑1 AAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACC < 1:2090063/91‑1 AGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTG < 2:1687314/91‑1 AGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTG < 2:3072155/91‑1 AGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTG < 2:3875845/91‑1 AGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTG < 1:1571807/91‑1 GCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTT < 1:3780490/91‑1 ATTAGAAAAAATATACAAAAAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTAT < 2:2127679/91‑1 ATTAGAAAAAATATACAAAAAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTAT < 2:2128784/91‑1 TACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTT < 1:2912481/91‑1 TACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTT < 1:2912741/91‑1 AAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGC < 2:1456221/91‑1 AAAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGC < 1:1074596/91‑1 AAACAGGTTAAGACCATTTTTTTTTTTTTTTTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 2:2882723/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCc > 2:3451141/1‑90 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA < 2:77071/91‑1 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA > 1:2825355/1‑91 AAACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCA < 2:76781/91‑1 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA < 2:2954669/91‑1 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA < 2:2954695/91‑1 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA > 2:1754912/1‑91 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA < 2:3237357/91‑1 AACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAA > 1:3123452/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 1:2472959/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 1:3284720/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 2:2734355/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 1:2898532/1‑91 ACAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAAC > 1:2792982/1‑91 CAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACT < 2:3538047/91‑1 CAGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACT > 1:2265019/1‑91 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT < 2:3432058/91‑1 AGGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTT < 2:2969780/91‑1 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTT < 2:809483/91‑1 GGTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTT < 1:2074975/91‑1 GTTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTCTCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTc > 2:1572221/1‑90 TTAAGACCATTTTTTTTTTTTTTTTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCCACTTTAG > 2:850648/1‑91 TTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAG < 2:1237751/91‑1 TTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAG > 1:1655783/1‑91 TTAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAG > 2:3504425/1‑91 TAAGACCATTTTTTGTTTTAATCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTTTTTGTATATTTTTTCTAATGCAACTTTAGC > 2:1950401/1‑91 TAAGACCATTTTTTGTTTCTTCCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 2:1949767/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCCATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 1:712698/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 2:1559457/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 2:1108167/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:265599/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 2:1559472/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:1269192/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 2:1702673/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 2:1702702/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < 1:1883522/91‑1 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 1:1042728/1‑91 TAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAAATTCTTTGTATATTTTTTCTAATGCAACTTTAGC > 1:3243662/1‑91 GAAAAATGATTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168060‑1168159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaggttAAGACCATTTTTTGTCTCAACCTGTTTTATTTATTATCTATTTATAATTTCATCAATTTCTTTGTATATTTTTTCTAATGCAACTTTAGC < USA300TCH1516_ALE/1168177‑1168088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |