BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1168159	209 (1.030)	20 (0.110)	9/140	NT	8.7%	intergenic (+15/+638)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein
*	?	USA300TCH1516_ALE	= 1168177	235 (1.320)	20 (0.110)	9/140	NT	8.7%	intergenic (+33/+620)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein

Only 100 of 366 total aligned reads displayed.

TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAA  >  USA300TCH1516_ALE/1168069‑1168249

   cGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTgag                                                                                         <  1:2236011/91‑1 (MQ=255)

    gTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTgaga                                                                                        <  2:1445895/91‑1 (MQ=255)

     tATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGAc                                                                                       >  1:2620611/1‑91 (MQ=255)

      aTCAATTGCCCATGACAAAGTGGCTCTAGAAAAAATATACAAAGAAGCTCAGATTATTATAAACAAATAATAAATAAAACAGGTTAAGAcc                                                                                      <  2:1356088/91‑2 (MQ=255)

      aTCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACa                                                                                      >  2:699272/1‑91 (MQ=255)

       tCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACaa                                                                                     <  1:522578/91‑1 (MQ=255)

         aaTGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACaaaa                                                                                   <  1:2050890/91‑1 (MQ=255)

            ggCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAAt                                                                                <  1:1186602/91‑1 (MQ=255)

              cTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATgg                                                                              <  2:2369152/91‑1 (MQ=255)

               tGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGt                                                                             >  1:2793645/1‑91 (MQ=255)

                 aTGCTAAAGTTGCAGTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAACATGGTCt                                                                           >  1:1326092/1‑91 (MQ=255)

                  tGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctc                                                                          <  2:2149335‑M1/91‑19 (MQ=255)

                  tGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctc                                                                          <  1:644753‑M1/91‑19 (MQ=255)

                  tGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCtt                                                                          <  1:3089689/91‑1 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAATTTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                         >  1:3243662‑M2/1‑90 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCttt                                                                         >  2:3132206/1‑90 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                         <  2:1559472‑M2/91‑2 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                         <  2:1108167‑M2/91‑2 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                         <  1:265599‑M2/91‑2 (MQ=255)

                   gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGAAGAAACAAAAAATGGTCTTa                                                                         >  2:1949767‑M2/1‑90 (MQ=255)

                    cTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaa                                                                        <  2:1237751‑M2/91‑3 (MQ=255)

                    cTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaa                                                                        >  1:1655783‑M2/1‑89 (MQ=255)

                    cTAAAGTGGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAAAAAAAAAAAAAAAATGGTCTTaa                                                                        >  2:850648‑M2/1‑89 (MQ=255)

                     tAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaac                                                                       <  1:2105811‑M1/91‑22 (MQ=255)

                     caaagTTGCATTAGAAAAAATATACAAAGAAATTGACGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaac                                                                       <  2:3925289‑M1/90‑22 (MQ=255)

                      aaaGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacc                                                                      <  1:2074975‑M2/91‑5 (MQ=255)

                        aGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaacctg                                                                    <  1:1571807‑M1/91‑25 (MQ=255)

                        aGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaacctg                                                                    <  2:1687314‑M1/91‑25 (MQ=255)

                         gTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgt                                                                   >  1:3284720‑M2/1‑84 (MQ=255)

                         gTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgt                                                                   >  2:2734355‑M2/1‑84 (MQ=255)

                          ttGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgtt                                                                  >  2:1754912‑M2/1‑83 (MQ=255)

                          ttGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgtt                                                                  <  2:3237357‑M2/91‑9 (MQ=255)

                            gCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaacctgtttt                                                                <  1:3780490‑M1/91‑29 (MQ=255)

                              aTTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCa                                                              >  2:3757554/1‑91 (MQ=255)

                              aTTAGAAAAAATATACAAAAAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTaagaccattttttgtctcaacctgttttat                                                              <  2:2128784‑M1/91‑31 (MQ=255)

                               ttAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCaa                                                             >  2:1597680/1‑91 (MQ=255)

                                tAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGATTTCAAt                                                            >  1:1959782/1‑91 (MQ=255)

                                 aGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAAtt                                                           >  1:2974242/1‑91 (MQ=255)

                                 aGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAAtt                                                           <  1:755558/91‑1 (MQ=255)

                                       aaTATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCata                                                     >  1:2940285/1‑91 (MQ=255)

                                       aaTATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCata                                                     >  1:2322071/1‑91 (MQ=255)

                                        atatACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCatat                                                    >  1:11387/1‑91 (MQ=255)

                                         tataCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATAtg                                                   <  1:257167/91‑1 (MQ=255)

                                           taCAAAGAAAATAATGAAATTATAAATAGATGATAAATAAAACAAAATAAAAAAAAAAATGGTCTTAACCTGTTTTCAATTTGCATAtgtg                                                 <  2:628947/91‑1 (MQ=255)

                                            aCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGa                                                >  2:2580660/1‑91 (MQ=255)

                                            aCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGATAAAAAAAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGa                                                <  2:715871/91‑1 (MQ=255)

                                             cAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGAt                                               >  2:1365519/1‑91 (MQ=255)

                                             cAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTCTCAATTTGCACATGTGaa                                               >  2:1094603/1‑90 (MQ=255)

                                               aaGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATaa                                             <  1:605197/91‑1 (MQ=255)

                                                aGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATaaa                                            <  1:1520930/91‑1 (MQ=255)

                                                aGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATaaa                                            >  2:1725918/1‑91 (MQ=255)

                                                  aaaTTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAAtt                                          <  1:2405381/91‑1 (MQ=255)

                                                   aaTTGATGAAATTATAAATAGATAATAAATAATACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGTATATGTGATAAATTc                                         <  1:3370914/91‑1 (MQ=255)

                                                   aaTAGATGAATTTATAAATAGATAATAAATAAAACAGGTTGAGACAAACAATGGTCTTCACCTGTTTTCAATTTGCATATGTGATAAATTc                                         <  1:1747641/91‑1 (MQ=255)

                                                      tgatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAGAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtat                                      <  1:3131086/91‑1 (MQ=255)

                                                      tgatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtat                                      <  1:3898903/91‑1 (MQ=255)

                                                      tgatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtat                                      >  1:3539027/1‑91 (MQ=255)

                                                       gatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtata                                     >  1:3645356/1‑91 (MQ=255)

                                                       gatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtata                                     >  1:2828276/1‑91 (MQ=255)

                                                       gatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtata                                     <  1:2485020/91‑1 (MQ=255)

                                                        atgaAATTATAAATAGATGATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTatat                                    <  2:3386151/91‑1 (MQ=255)

                                                        atgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTatat                                    >  1:1112018/1‑91 (MQ=255)

                                                           aaaTTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaa                                 <  2:1028347/91‑1 (MQ=255)

                                                            aaTTATAAATAGATAATCAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaaa                                <  1:3386364/91‑1 (MQ=255)

                                                             aTTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaaaa                               <  2:2684630/91‑1 (MQ=255)

                                                             aTTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaaaa                               <  2:3083636/91‑1 (MQ=255)

                                                              ttATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAAt                              <  1:3179957/91‑1 (MQ=255)

                                                                 taAATAGATAATAAATAAAACAAGATAAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCt                           <  2:1643778/91‑1 (MQ=255)

                                                                  aaaTAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgttttatttattatctatttataatttcatcaatttctttgta                          <  1:2912481‑M2/91‑49 (MQ=255)

                                                                  aaaTAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCtt                          <  2:921994/91‑1 (MQ=255)

                                                                    aTAGATAATAAATAAAACAGGATGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAACTCTATATCAAAATGCTTAt                        >  2:2810388/1‑91 (MQ=255)

                                                                     tAGATAATAAATAAAACAGGTTGAGACACAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTACATCAAAATGCTTATg                       >  2:349719/1‑91 (MQ=255)

                                                                     tAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATg                       <  1:274610/91‑1 (MQ=255)

                                                                           ataaataaAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaat                 >  2:208077/1‑91 (MQ=255)

                                                                             aaataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatga               <  2:2839891/91‑1 (MQ=255)

                                                                             aaataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatga               >  1:1863000/1‑91 (MQ=255)

                                                                              aataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatgaa              <  1:88913/91‑1 (MQ=255)

                                                                               ataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatgaat             <  2:3942106/91‑1 (MQ=255)

                                                                               ataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatgaat             >  2:3617452/1‑91 (MQ=255)

                                                                                taaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatgaatg            <  2:3047643/91‑1 (MQ=255)

                                                                                 aaaaCAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgc           <  1:1074596‑M1/91‑82 (MQ=255)

                                                                                 aaaaCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAatgaatga           <  2:2276844/91‑1 (MQ=255)

                                                                                 aaaaCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAatgaatga           >  1:1383671/1‑91 (MQ=255)

                                                                                  aaaCAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcc          >  2:3451141‑M1/1‑9 (MQ=255)

                                                                                  aaaCAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgca          <  2:77071‑M1/91‑83 (MQ=255)

                                                                                   aaCAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaa         <  2:2954669‑M1/91‑84 (MQ=255)

                                                                                    aCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAt        >  1:3849778/1‑91 (MQ=255)

                                                                                     cAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaact       <  2:3538047‑M1/91‑86 (MQ=255)

                                                                                     cAGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaact       >  1:2265019‑M1/1‑6 (MQ=255)

                                                                                     cAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAtt       <  1:831322/91‑1 (MQ=255)

                                                                                     cAGGTTGAGACAAAAAATGGTCTTAACCTGTTCTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAtt       >  2:3875585/1‑91 (MQ=255)

                                                                                      aGGTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaactt      <  2:2969780‑M1/91‑87 (MQ=255)

                                                                                      aGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAttt      >  2:2478597/1‑91 (MQ=255)

                                                                                       ggTTaagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaacttt     <  2:809483‑M1/91‑88 (MQ=255)

                                                                                         ttGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaaa   <  1:3484037/91‑1 (MQ=255)

                                                                                          taagaccattttttgtctcaacctgttttatttattatctatttataatttcatccatttctttgtatattttttctaatgcaactttagc  >  1:712698‑M1/1‑1 (MQ=255)

                                                                                          taagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaactttagc  >  1:1042728‑M1/1‑1 (MQ=255)

                                                                                          taagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaactttagc  <  2:1559457‑M1/91‑91 (MQ=255)

                                                                                          taagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaactttagc  <  1:1269192‑M1/91‑91 (MQ=255)

                                                                                          taagaccattttttgtctcaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaactttagc  >  2:1702673‑M1/1‑1 (MQ=255)

TTTCGTATCAATGGCTGATGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAA  >  USA300TCH1516_ALE/1168069‑1168249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.