BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1168159	209 (1.030)	20 (0.110)	9/140	NT	8.7%	intergenic (+15/+638)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein
*	?	USA300TCH1516_ALE	= 1168177	235 (1.320)	20 (0.110)	9/140	NT	8.7%	intergenic (+33/+620)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein

Only 100 of 331 total aligned reads displayed.

TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAATATA  >  USA300TCH1516_ALE/1168087‑1168267

tGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCtt                                                                                            <  1:110672/91‑1 (MQ=255)

 gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCttt                                                                                           >  2:3132206/1‑90 (MQ=255)

 gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                                           <  2:1108167‑M2/91‑2 (MQ=255)

 gCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTa                                                                                           >  2:1702702‑M2/1‑90 (MQ=255)

  cTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaa                                                                                          >  1:1655783‑M2/1‑89 (MQ=255)

   gaaagTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGAGAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaac                                                                                         >  2:1572221‑M2/2‑88 (MQ=255)

    aaaGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacc                                                                                        <  2:809483‑M2/91‑5 (MQ=255)

    aaaGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacc                                                                                        <  1:2074975‑M2/91‑5 (MQ=255)

     aaGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacct                                                                                       <  2:2969780‑M2/91‑6 (MQ=255)

      aggtGCATGAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTg                                                                                      <  2:3331525/88‑1 (MQ=255)

       gTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgt                                                                                     >  1:3284720‑M2/1‑84 (MQ=255)

        ttGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgtt                                                                                    <  2:2954695‑M2/91‑9 (MQ=255)

         tGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgttt                                                                                   >  1:2825355‑M2/1‑82 (MQ=255)

         tGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgttt                                                                                   <  2:76781‑M2/91‑10 (MQ=255)

         tGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAAAAAAAAAAAAAAAATGGTCTTaacctgttt                                                                                   >  2:2882723‑M2/1‑82 (MQ=255)

          gCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgtttt                                                                                  <  2:1456221‑M2/91‑11 (MQ=255)

            aTTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCa                                                                                >  1:1058459/1‑91 (MQ=255)

            aTTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCa                                                                                >  2:3757554/1‑91 (MQ=255)

             ttAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCaa                                                                               >  2:3465905/1‑91 (MQ=255)

             ttAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCaa                                                                               >  1:1505046/1‑91 (MQ=255)

              tAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAAt                                                                              <  1:633031/91‑1 (MQ=255)

              tAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAAt                                                                              >  1:3629479/1‑91 (MQ=255)

               aGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAAtt                                                                             <  1:755558/91‑1 (MQ=255)

                gAAAAAATATACAAAGAAATAGATGAAATTATAAATAGATAATAAATAAAAAAGAAAGAGACAAAAAATGGTCTTAACCTGTTTTCAAttt                                                                            <  2:2301573/91‑1 (MQ=255)

                 aaaaaaTATACAAAGATATTGATGAAATTATAAATAGATAATAAATAAATCAGGTTGAGACAAATAATGGTCTTAACCTGTTTTCAATTTg                                                                           >  2:2132389/1‑91 (MQ=255)

                   aaaaTATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCa                                                                         >  1:1310554/1‑91 (MQ=255)

                    aaaTATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCat                                                                        >  1:1236007/1‑91 (MQ=255)

                         taCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATAtgtg                                                                   >  1:3012706/1‑91 (MQ=255)

                          aCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGa                                                                  >  2:2580660/1‑91 (MQ=255)

                          aCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGa                                                                  >  1:36576/1‑91 (MQ=255)

                          aCAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGATAAAAAAAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGa                                                                  <  2:715871/91‑1 (MQ=255)

                           cAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGAt                                                                 >  1:2021013/1‑91 (MQ=255)

                            aaaGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATa                                                                >  2:2241993/1‑91 (MQ=255)

                            aaaGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATa                                                                >  1:1156393/1‑91 (MQ=255)

                            aaaGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATa                                                                >  2:3510844/1‑91 (MQ=255)

                             aaGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATaa                                                               <  1:605197/91‑1 (MQ=255)

                                aaaTTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAAtt                                                            <  1:2405381/91‑1 (MQ=255)

                                aaaTTGATGAAATTATAAATAGATAATAAATAAAACAAGAAAAAAAAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAAtt                                                            <  2:2694022/91‑1 (MQ=255)

                                   ttGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCta                                                         <  1:786494/91‑1 (MQ=255)

                                   ttGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCta                                                         >  2:961019/1‑91 (MQ=255)

                                   ttGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCta                                                         <  1:1712470/91‑1 (MQ=255)

                                    tgatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtat                                                        <  1:3899232/91‑1 (MQ=255)

                                    tgatgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCtat                                                        >  1:3539027/1‑91 (MQ=255)

                                      atgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTatat                                                      >  2:1342784/1‑91 (MQ=255)

                                       tgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATc                                                     >  1:649338/1‑91 (MQ=255)

                                       tgaAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATc                                                     <  2:1386109/91‑1 (MQ=255)

                                         aaaTTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaa                                                   <  1:1114748/91‑1 (MQ=255)

                                           aTTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCaaaa                                                 <  2:3083636/91‑1 (MQ=255)

                                            ttATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAAt                                                <  1:3179957/91‑1 (MQ=255)

                                                aaaTAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTaacctgttttatttattatctatttataatttcatcaatttctttgta                                            <  1:2912741‑M2/91‑49 (MQ=255)

                                                  aTAGATAATAAATAAAACAGGTTGAGACCAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTAt                                          >  2:2764207/1‑91 (MQ=255)

                                                   tAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATg                                         <  2:670330/91‑1 (MQ=255)

                                                   tAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATg                                         <  1:274610/91‑1 (MQ=255)

                                                    aGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGt                                        <  1:588193/91‑1 (MQ=255)

                                                        aataaataAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATGAAAATGCTTATGTATaa                                    >  1:3385912/1‑91 (MQ=255)

                                                        aataaataAAACAAAAAAAAAAAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaa                                    <  2:907815/91‑1 (MQ=255)

                                                         ataaataaAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaat                                   >  1:832433/1‑91 (MQ=255)

                                                           aaataaaACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATaatga                                 <  2:2839845/91‑1 (MQ=255)

                                                               aaatCAGGTTGAAACACAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAatgaatga                             <  2:3788818/91‑1 (MQ=255)

                                                               aaaaCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAatgaatga                             <  2:422931/91‑1 (MQ=255)

                                                               aaaaCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAatgaatga                             >  1:1737240/1‑91 (MQ=255)

                                                                 aaCAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTACATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACa                           >  1:2553076/1‑91 (MQ=255)

                                                                   cAGGTTGAGACAAAAAATGGTCTTaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaact                         <  2:1687314‑M2/91‑68 (MQ=255)

                                                                   cAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAtt                         >  1:2669303/1‑91 (MQ=255)

                                                                   cAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAtt                         <  1:343633/91‑1 (MQ=255)

                                                                    aGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAttt                        >  2:2478597/1‑91 (MQ=255)

                                                                    aGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAttt                        <  1:1888644/91‑1 (MQ=255)

                                                                    aGGTTGAGACAAAAAATGGTCTTAACCTGATTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACAttt                        >  2:3441101/1‑91 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTaacctgttttatttattatctatttataatttcgtcaatttctttgtatattttttctaatgcaactttg                      <  2:3925289‑M2/91‑71 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTaacctgttttatttattatctatttataatttcatcaatttctttgtatattttttctaatgcaacttta                      <  1:2105811‑M2/91‑71 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGTATGACATTTaa                      >  2:3580057/1‑91 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaa                      >  1:1539810/1‑91 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaa                      <  1:2309076/91‑1 (MQ=255)

                                                                      gTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTCATGTATAATGAATGACATTTaa                      >  1:1832942/1‑91 (MQ=255)

                                                                       ttGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaaa                     <  1:3484037/91‑1 (MQ=255)

                                                                       ttGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaaa                     >  1:257976/1‑91 (MQ=255)

                                                                        tGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTaaaa                    >  1:3789174/1‑91 (MQ=255)

                                                                         gagaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAg                   <  2:2064623/91‑1 (MQ=255)

                                                                          agaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGt                  >  2:1630679/1‑91 (MQ=255)

                                                                          agaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGt                  >  1:2973782/1‑91 (MQ=255)

                                                                          agaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGt                  >  2:3881188/1‑91 (MQ=255)

                                                                          agaCAAAAAATGGTATTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGt                  >  2:1906042/1‑91 (MQ=255)

                                                                           gaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTa                 <  2:2447433/91‑1 (MQ=255)

                                                                           gaCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTa                 >  2:3705083/1‑91 (MQ=255)

                                                                            accaaaaaTCGTCTCAACCGGTATTCAATTTGCATCTGTGATCAATGCTCCATCCAACTGCTTATGTATAATGAATGACATTTCAATGTAg                >  2:2791935/4‑91 (MQ=255)

                                                                            aCAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAg                >  2:2791572/1‑91 (MQ=255)

                                                                               aaaaaTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAgggg             >  2:1011749/1‑91 (MQ=255)

                                                                               aaaaaTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAgggg             >  1:2267194/1‑91 (MQ=255)

                                                                               aaaaaTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAgggg             >  2:1248436/1‑91 (MQ=255)

                                                                                aaaaTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGga            <  1:1035932/91‑1 (MQ=255)

                                                                                aaaaTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGga            >  2:2085891/1‑91 (MQ=255)

                                                                                   aTGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGAc         <  2:2624995/91‑1 (MQ=255)

                                                                                    tGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACa        <  2:1761853/91‑1 (MQ=255)

                                                                                     ggTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACaa       >  2:1059347/1‑91 (MQ=255)

                                                                                     ggTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACaa       >  2:2535000/1‑91 (MQ=255)

                                                                                        cTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAata    <  1:2261054/91‑1 (MQ=255)

                                                                                        cTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAata    <  1:3880027/91‑1 (MQ=255)

                                                                                        cTTAACCTGTTTTCAACTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAata    <  2:3034297/91‑1 (MQ=255)

                                                                                         ttAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAatat   >  1:3135318/1‑91 (MQ=255)

                                                                                          tAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAAtata  <  1:3106530/91‑1 (MQ=255)

TGCTAAAGTTGCATTAGAAAAAATATACAAAGAAATTGATGAAATTATAAATAGATAATAAATAAAACAGGTTGAGACAAAAAATGGTCTTAACCTGTTTTCAATTTGCATATGTGATAAATTCTATATCAAAATGCTTATGTATAATGAATGACATTTAAAAGTAGGGGAGACAAATATA  >  USA300TCH1516_ALE/1168087‑1168267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.