| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1168782 | 286 (1.400) | 17 (0.090) +AGCTGT |
7/148 | NT | 7.3% | intergenic (+638/+15) | scn_2/USA300HOU_RS05810 | Staphylococcal complement inhibitor/hypothetical protein |
| ? | USA300TCH1516_ALE | 2664923 = | 181 (0.890) | intergenic (+158/+280) | pitA_2/USA300TCH1516_02535 | L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein | |||||
ATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168702‑1168782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATC > USA300TCH1516_ALE/2664923‑2665009 |||||| ATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTA‑ATGATTTATTATGTAGTGGTTCTTTATCATTAGCTGTAGCT < 2:243735/91‑1 TACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAA > 1:3933241/1‑91 ACCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCAT > 1:2833370/1‑91 CCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATA > 2:2093161/1‑91 CCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATA > 1:2702002/1‑91 CCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATA > 1:2702539/1‑91 tACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTACTGTGTACTTCAAAA‑ATGAATACATGAGCAAAGCTCATGCATAA > 2:1554441/2‑91 CACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAA > 1:3467678/1‑91 ACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTCGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAG > 1:207985/1‑91 ACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAG > 2:3078046/1‑91 ACTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAG > 1:3272864/1‑91 CTACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGA > 2:3653535/1‑91 ACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAA > 2:1131351/1‑91 ACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAA > 2:1131328/1‑91 ACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAA > 1:2649457/1‑91 ACATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAA > 1:654276/1‑91 CATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAAT > 2:2511075/1‑91 CATAATAAATCAT‑TAGTGGTTCTTTATCATTAGCTGTAGCTAATGTGTACTTAAAAA‑ATGAATACATGAGTAAAGCTCATGCATAAGAAAT > 1:2971929/1‑91 acaCATTAGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAT > 2:2575534/4‑91 CATTAGCTGTGGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTC > 1:1585752/1‑91 TTAGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTT > 1:1895393/1‑91 TTAGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTT > 1:1894817/1‑91 TAGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAACCGCATTTCTct > 2:3619027/1‑89 AGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTA > 1:1881953/1‑91 AGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTA > 1:1945537/1‑91 AGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTA > 1:1942970/1‑91 AGCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTA > 1:1882409/1‑91 GCTGTGGCTAATGTGTACTTACAAATAGGAATACATGAGTAAAACTCATGCATCAGACATACTAAGTTCTATAGAAAAAGTATTTCTTTAT > 2:3765199/1‑91 GCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTAT > 2:2715133/1‑91 GCTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTAT > 2:2715181/1‑91 CTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATC > 1:2033139/1‑91 CTGTGGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATGTCTATAGAAAAAGTATTTCTTTATC > 2:576218/1‑91 |||||| ATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCAT‑TAGTGGTTCTTTATCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1168702‑1168782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATC > USA300TCH1516_ALE/2664923‑2665009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |