BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1168782	286 (1.400)	17 (0.090) +AGCTGT	7/148	NT	7.3%	intergenic (+638/+15)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein
*	?	USA300TCH1516_ALE	2664923 =	181 (0.890)	17 (0.090) +AGCTGT	7/148	NT	7.3%	intergenic (+158/+280)	pitA_2/USA300TCH1516_02535	L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein

Only 100 of 340 total aligned reads displayed.

TTACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATAAGC  >  USA300TCH1516_ALE/1168692‑1168872

ttACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCAtt                                                                                            >  2:769041/1‑91 (MQ=255)

 tACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCAttt                                                                                           <  1:2759202/91‑1 (MQ=255)

 tACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCAttt                                                                                           >  2:3445504/1‑91 (MQ=255)

      aTGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtc                                                                                      <  2:1373184/91‑1 (MQ=255)

      aTGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtc                                                                                      <  1:2169320/91‑1 (MQ=255)

      aTGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtc                                                                                      <  1:1952754/91‑1 (MQ=255)

       tGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtct                                                                                     >  2:684055/1‑91 (MQ=255)

       tGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtct                                                                                     >  1:3452583/1‑91 (MQ=255)

       tGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtct                                                                                     >  1:3539878/1‑91 (MQ=255)

        gTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTAtctc                                                                                    <  1:1616160/91‑1 (MQ=255)

        gTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATCAGTGGTTCTTTATCATTTCCAtctc                                                                                    >  2:2738216/1‑91 (MQ=255)

          aTTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCAc                                                                                  <  1:79439/91‑1 (MQ=255)

           ttCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCAct                                                                                 <  2:2401218/91‑1 (MQ=255)

           ttCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCAct                                                                                 <  1:1473447/91‑1 (MQ=255)

            tCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActc                                                                                >  1:491146/1‑91 (MQ=255)

             cATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActct                                                                               >  1:1575996/1‑91 (MQ=255)

             cATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActct                                                                               >  2:1600007/1‑91 (MQ=255)

             cATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActct                                                                               <  2:1485547/91‑1 (MQ=255)

             cATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActct                                                                               >  2:3743978/1‑91 (MQ=255)

               ttttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTGttt                                                                             >  1:3181382/1‑91 (MQ=255)

               ttttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCttt                                                                             >  2:874666/1‑91 (MQ=255)

               ttttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCttt                                                                             >  2:3480213/1‑91 (MQ=255)

                  tttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTAc                                                                          <  2:1671992/91‑1 (MQ=255)

                    tAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTg                                                                        <  2:3771599/91‑1 (MQ=255)

                    tAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTg                                                                        >  1:2985418/1‑91 (MQ=255)

                     aaGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTgg                                                                       <  1:2645050/91‑1 (MQ=255)

                      aGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGga                                                                      >  1:1010031/1‑91 (MQ=255)

                      aGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGga                                                                      >  1:3360985/1‑91 (MQ=255)

                       gTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaa                                                                     <  1:918682/91‑1 (MQ=255)

                       gTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaa                                                                     <  1:2851418/91‑1 (MQ=255)

                        tACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaag                                                                    <  2:1105490/91‑1 (MQ=255)

                          cacaTTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaagaa                                                                  >  2:1030282/1‑91 (MQ=255)

                             aTTAGCTGTAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGaaaaa                                                               >  1:2959566/1‑91 (MQ=255)

                                 gCTACAGCTAATGATAAAGTACCACTTCATATTAAATCATTAGTGGTTCTTTATCATTTCTATCTCTCTTTTTTACTGGAAGAAAAAGttt                                                           <  2:3296078/91‑1 (MQ=25)

                                 gCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGttt                                                           <  2:2544325/91‑1 (MQ=255)

                                 gCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGttt                                                           >  1:1258095/1‑91 (MQ=255)

                                  cTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTa                                                          <  1:2423069/91‑1 (MQ=255)

                                   tACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTAc                                                         >  2:3232307/1‑91 (MQ=255)

                                     taGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGt                                                       >  2:3460909/2‑91 (MQ=255)

                                      aGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGtt                                                      >  2:2257790/1‑91 (MQ=255)

                                      aGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGtt                                                      >  1:1134075/1‑91 (MQ=255)

                                          aaTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTa                                                  >  1:1717632/1‑91 (MQ=255)

                                           aTGATAAAGACCAGCTGCATAATAAATAATTAATGGTTATTTATCATTTCTATTTCACTCTAAAAAAAAAAAAAAAAGTTTACGTTTGTAg                                                 <  2:424872/91‑1 (MQ=255)

                                           aTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAg                                                 <  1:2241847/91‑1 (MQ=255)

                                            tGATAAAGAACCACTACATAATAAATCAATAGTGGTTCTTTATCATTTCTATCTCACTCTATAAATGAAAAAAAAAGTTTACGTTTGTAGa                                                <  2:3344880/91‑1 (MQ=21)

                                             gATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGaa                                               >  1:1397992/1‑91 (MQ=255)

                                             gATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGaa                                               <  2:1959451/91‑1 (MQ=255)

                                             gATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGaa                                               >  1:98151/1‑91 (MQ=255)

                                              aTAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAAc                                              >  2:3049722/1‑91 (MQ=255)

                                                aaaGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACAt                                            >  1:3810273/1‑91 (MQ=255)

                                                 aaGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATg                                           >  1:1611583/1‑91 (MQ=255)

                                                 aaGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATg                                           >  2:3518424/1‑91 (MQ=255)

                                                    aaCCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCca                                        <  2:152871/91‑1 (MQ=255)

                                                     aCCACTACATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcat                                       >  1:2833370‑M1/1‑38 (MQ=255)

                                                     aCCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCcac                                       >  2:2021778/1‑91 (MQ=255)

                                                      ccACTACATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcata                                      >  1:2702539‑M1/1‑37 (MQ=255)

                                                       cACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACaa                                     >  1:2521504/1‑91 (MQ=255)

                                                        aCTACATAATAAATCATTAGTGGTTCTTTATCATTcgctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcataag                                    >  1:207985‑M1/1‑35 (MQ=255)

                                                        aCTACATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcataag                                    >  1:3272864‑M1/1‑35 (MQ=255)

                                                        aCTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCtacact                                    >  2:582329/1‑89 (MQ=255)

                                                         cTACATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcataaga                                   >  2:3653535‑M1/1‑34 (MQ=255)

                                                         cTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATa                                   >  2:2899200/1‑91 (MQ=255)

                                                         cTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATa                                   >  1:3953294/1‑91 (MQ=255)

                                                          tACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAc                                  >  1:3721639/1‑91 (MQ=255)

                                                           aCATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcataagaaa                                 >  1:654276‑M1/1‑32 (MQ=255)

                                                           aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 >  2:487171/1‑91 (MQ=255)

                                                           aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 <  2:3089134/91‑1 (MQ=255)

                                                           aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 >  1:3023870/1‑91 (MQ=255)

                                                           aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 <  2:1424961/91‑1 (MQ=255)

                                                            cATAATAAATCATTAGTGGTTCTTTATCATTagctgtagctaatgtgtacttaaaaaatgaatacatgagtaaagctcatgcataagaaat                                >  2:2511075‑M1/1‑31 (MQ=255)

                                                            cATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCa                                <  1:119596/91‑1 (MQ=255)

                                                            cATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCAACAATACCa                                <  2:3904681/91‑1 (MQ=255)

                                                              taataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaa                              <  1:52803/91‑1 (MQ=255)

                                                                ataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaaaa                            >  2:3825279/1‑91 (MQ=255)

                                                                 taaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAACaat                           >  2:1147607/1‑91 (MQ=255)

                                                                     tCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAAtt                       >  1:104564/1‑91 (MQ=255)

                                                                     tCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAAtt                       <  1:3642473/91‑1 (MQ=255)

                                                                     tCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAAtt                       <  1:3896556/91‑1 (MQ=255)

                                                                      cATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTa                      >  2:2355925/1‑91 (MQ=255)

                                                                        ttAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAg                    >  1:2349842/1‑91 (MQ=255)

                                                                         aagtagtTCTTTATCATTTCTATCTCACTCTTTTACTGGAATAAAAAGTGTACGTTTGTAGAACATGCCACAATACCAAAAAAAAATaaaa                   <  2:1573128/90‑3 (MQ=37)

                                                                           gTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaa                 <  2:2082881/91‑1 (MQ=255)

                                                                            tGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaa                >  2:1773512/1‑91 (MQ=255)

                                                                             ggTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaaa               >  1:1837132/1‑91 (MQ=255)

                                                                             ggTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaaa               >  1:686220/1‑91 (MQ=255)

                                                                             ggTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaaa               >  2:264450/1‑91 (MQ=255)

                                                                                tCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATaa            <  2:2107216/91‑1 (MQ=255)

                                                                                 cTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAg           >  1:2004960/1‑91 (MQ=255)

                                                                                 cTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAg           >  1:3130791/1‑91 (MQ=255)

                                                                                 atatATCATTTCTATCTCACTCTTTTACTAGAAGAAAAAGTTTACGTTTGTAGAACAAGCCACAAAAACAAAAATAATTAAGAAAAATAAg           <  2:3944140/88‑1 (MQ=255)

                                                                                   ttATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGAc         <  1:3844277/91‑1 (MQ=255)

                                                                                    tATCATTTCTATCTCACTCTTTTACTTGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAACAAAAATAAGACg        >  2:3280589/1‑91 (MQ=255)

                                                                                    tATCATTTCTAGCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACg        <  2:1279841/91‑1 (MQ=255)

                                                                                      tCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGAt      <  1:1687901/91‑1 (MQ=255)

                                                                                      tCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGAt      >  1:3076144/1‑91 (MQ=255)

                                                                                       cATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATa     >  1:3603434/1‑91 (MQ=255)

                                                                                       cATTTCTATCTCACTCTTAAACAAGAAAAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATa     <  2:818354/91‑1 (MQ=255)

                                                                                        aTTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATaa    <  1:2867629/91‑1 (MQ=255)

                                                                                         ttagctgtggctaatgtgtacttaaaaataggaatacatgagtaaaactcatgcataagaaatactaatttctatagaaaaagtatttctt   >  1:1895393‑M1/1‑2 (MQ=255)

                                                                                          tagctgtggctaatgtgtacttaaaaataggaatacatgagtaaaactcatgcataagaaatactaatttctatagaaaccgcatttctct  >  2:3619027‑M1/1‑1 (MQ=255)

TTACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATAAGC  >  USA300TCH1516_ALE/1168692‑1168872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.