| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1177547 | 166 (0.810) | 10 (0.060) | 7/142 | NT | 6.1% | intergenic (+66/‑106) | arcC1_2/USA300HOU_RS05870 | Carbamate kinase 1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1177574 | 162 (0.900) | intergenic (+93/‑79) | arcC1_2/USA300HOU_RS05870 | Carbamate kinase 1/hypothetical protein | |||||
GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1177449‑1177547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaccccGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCAATT < USA300TCH1516_ALE/1177574‑1177485 GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATG > 2:2664392/1‑91GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATG > 1:511193/1‑91GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATG < 1:396873/91‑1 AGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGT < 1:2064812/91‑1 AGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGT > 2:3928940/1‑91 AGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGT < 1:3389436/91‑1 AGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGT > 2:3929506/1‑91 GGGTAAAGTAGGTACTGTGTTTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTG > 2:1884493/1‑91 GGGTAAAGTAGGTACTATGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTG < 2:2672023/91‑1 GGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGC < 1:1526052/91‑1 GGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGC < 1:2011735/91‑1 GGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGC > 1:3609994/1‑91 GGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGC < 2:3955882/91‑1 GTAAAGTAGGTACTGTGATTCAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATCATTTATGTGCA > 2:1635714/1‑91 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAACCGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTTTTTATGTtcc > 2:256347/1‑88 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCA > 2:439842/1‑91 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCA > 2:439917/1‑91 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCA > 2:163333/1‑91 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCA > 2:1271159/1‑91 GTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCA > 2:1297360/1‑91 TAAAGTAGGTACTGTGATTAAAACGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCAC > 2:2648163/1‑91 TAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCAC > 1:2907607/1‑91 TAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCAC < 2:647266/91‑1 TAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCAC < 2:3692169/91‑1 TAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCAC < 2:559699/91‑1 AAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCC > 1:1449401/1‑91 AGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCC < 1:2402597/91‑1 TTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTC < 1:2719087/91‑1 TTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTC < 1:1342522/91‑1 TGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCA < 2:3693587/91‑1 GAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAG < 2:967205/91‑1 GAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAG < 2:967359/91‑1 GAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAG < 1:218350/91‑1 AATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAGG < 1:2567565/91‑1 TGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGG < 1:3564892/91‑1 GAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGT < 1:424286/91‑1 AACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGC < 1:3919665/91‑1 TGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGACAAGCGT > 2:842389/1‑91 TGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGT < 2:3558352/91‑1 TGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGT > 2:842749/1‑91 TGCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGT > 2:921615/1‑91 GCACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTT < 1:2545709/91‑1 CACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTT > 1:3308460/1‑91 CACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTT < 1:2622316/91‑1 CACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTT > 1:1679096/1‑91 CACCCCGCATCAAAATAGAGGCATTACTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTT > 2:2236422/1‑91 gCCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTC < 2:808704/90‑1 ACCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAACGCTTTTC < 1:1196790/91‑1 CCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTaa > 2:2719289/1‑89 CCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCA > 1:1211186/1‑91 CCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCA < 1:3766212/91‑1 CCCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCA > 1:1513710/1‑91 CCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAACGCTTTTCAA < 1:986504/91‑1 CCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAACGCTTTTCAA < 1:986460/91‑1 CCCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCAA > 1:2963897/1‑91 CCGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCAAT > 2:62195/1‑91 CGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCAATT < 1:301498/91‑1 GAGGGTAAAGTAGGTACTGTGATTAAAAAGTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1177449‑1177547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaccccGCATCAAAATAGAGGCATTATTTTCAGGGGGTGCACATAAATAATAAAAATCATGCATTTGACATATAGTAATTGAAAAGCGTTTCAATT < USA300TCH1516_ALE/1177574‑1177485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |