BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1177547	166 (0.810)	10 (0.060)	7/142	NT	6.1%	intergenic (+66/‑106)	arcC1_2/USA300HOU_RS05870	Carbamate kinase 1/hypothetical protein
*	?	USA300TCH1516_ALE	= 1177574	162 (0.900)	10 (0.060)	7/142	NT	6.1%	intergenic (+93/‑79)	arcC1_2/USA300HOU_RS05870	Carbamate kinase 1/hypothetical protein

Only 100 of 250 total aligned reads displayed.

GAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGAAAATAC  >  USA300TCH1516_ALE/1177484‑1177663

   ttGAAAAGCGTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggg                                                                                        <  1:986460‑M2/91‑4 (MQ=255)

    tGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCgggg                                                                                       >  1:1513710‑M2/1‑87 (MQ=255)

    atttagcctagcatttctaccttaaagattttataaatataaattaagaaaGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCgggg                                                                                       >  2:3200334‑M1/52‑91 (MQ=255)

     gAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggc                                                                                      <  2:808704‑M2/91‑6 (MQ=255)

     gAAAAGCGTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggt                                                                                      <  1:1196790‑M2/91‑6 (MQ=255)

      aaaCGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggtg                                                                                     >  1:1679096‑M2/1‑85 (MQ=255)

      aaaCGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggtg                                                                                     <  1:2622316‑M2/91‑7 (MQ=255)

        aCGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggtgca                                                                                   <  2:3558352‑M2/91‑9 (MQ=255)

        aCGCTTGTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCggggtgca                                                                                   >  2:842389‑M2/1‑83 (MQ=255)

          gCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACt                                                                                 >  2:576744/1‑91 (MQ=255)

           cgtttCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGCTGCGGGGTGCACtt                                                                                >  2:752433/3‑91 (MQ=255)

           cTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACtt                                                                                >  2:2271468/1‑91 (MQ=255)

           cTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACtt                                                                                >  2:910699/1‑91 (MQ=255)

            ttttCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACttt                                                                               >  1:2994180/1‑91 (MQ=255)

             tttCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTc                                                                              <  1:892033/91‑1 (MQ=255)

              ttCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCt                                                                             <  1:3452266/91‑1 (MQ=255)

               tCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCtt                                                                            >  1:1568127/1‑91 (MQ=255)

               tCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCtt                                                                            >  1:335244/1‑91 (MQ=255)

               tCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCtt                                                                            >  1:333343/1‑91 (MQ=255)

                 aaTTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTaa                                                                          <  2:1982777/91‑1 (MQ=255)

                 aaTTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTaa                                                                          <  2:1712905/91‑1 (MQ=255)

                 aaTTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGCGCACTTTCTTaa                                                                          >  1:2772759/1‑91 (MQ=255)

                     aCTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAattta                                                                      <  1:2239514/91‑1 (MQ=255)

                     aCTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAattta                                                                      >  2:170363/1‑91 (MQ=255)

                        atatGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAatttatat                                                                   >  1:2520663/1‑91 (MQ=255)

                             tCAAATGCATGATTTTTATTATTTATGTGCGCCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAAtttatatatata                                                              <  2:3646384/91‑1 (MQ=255)

                              cAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATaa                                                             <  1:1056719/91‑1 (MQ=255)

                              cAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATaa                                                             <  1:2524072/91‑1 (MQ=255)

                               aaaTGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATaaa                                                            <  1:1010351/91‑1 (MQ=255)

                                  tGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATc                                                         >  1:1146947/1‑91 (MQ=255)

                                  tGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATc                                                         >  1:1147221/1‑91 (MQ=255)

                                  tGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATc                                                         <  1:638637/91‑1 (MQ=255)

                                   gCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCt                                                        >  2:1391403/1‑91 (MQ=255)

                                    cATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCtt                                                       <  1:2336682/91‑1 (MQ=255)

                                     aTGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCttt                                                      <  2:1629620/91‑1 (MQ=255)

                                       gATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTaa                                                    >  1:1637363/1‑91 (MQ=255)

                                       gATTTTTATTATTTATGTGCACCCCCTGAAAATAATGACTCTATTTTGATGCGGGGTGCACTTTCATAATTTATATTTATAAAATCTTTaa                                                    >  1:3674630/1‑91 (MQ=255)

                                       gATGTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTaa                                                    <  1:3191737/91‑1 (MQ=255)

                                        aTTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAg                                                   >  2:517413/1‑91 (MQ=255)

                                        aTTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAAGTTATATTTATAAAATCTTTAAg                                                   >  1:713977/1‑91 (MQ=255)

                                         tttttATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAgg                                                  >  2:3336718/1‑91 (MQ=255)

                                         tttttATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAgg                                                  <  1:155157/91‑1 (MQ=255)

                                         tttttATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAgg                                                  <  2:2296768/91‑1 (MQ=255)

                                          ttttATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGt                                                 >  2:2161815/1‑91 (MQ=255)

                                             tattatTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGa                                              <  1:2296978/91‑1 (MQ=255)

                                              atttttTATTTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaa                                             >  2:120274/1‑91 (MQ=255)

                                               ttatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaaa                                            <  1:2155450/91‑1 (MQ=255)

                                               ttatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaaa                                            <  1:3141892/91‑1 (MQ=255)

                                               ttatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaaa                                            >  1:2839046/1‑91 (MQ=255)

                                               ttatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaaa                                            <  2:2539522/91‑1 (MQ=255)

                                               ttatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGCGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGaaa                                            >  2:389738/1‑91 (MQ=255)

                                                tatttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAAt                                           >  1:3758695/1‑91 (MQ=255)

                                                 atttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATg                                          >  1:2741192/1‑91 (MQ=255)

                                                  tttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGc                                         >  1:2432488/1‑91 (MQ=255)

                                                  ttgatGTGCACCCCCGAAAAATAATGCCACTATTTCTATACGGGGTGCACTTTCGTAACTTATATTTATAAACTCTTTAAGGTAGAAATGc                                         <  2:2832106/88‑1 (MQ=255)

                                                   ttatGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCt                                        >  2:1883732/1‑91 (MQ=255)

                                                      tgtgCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAgg                                     >  2:1435106/1‑91 (MQ=255)

                                                       GTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGt                                    >  2:1776776‑M1/1‑91 (MQ=255)

                                                         GCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTa                                  <  1:3750646‑M1/91‑1 (MQ=255)

                                                          CACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTaa                                 <  1:1981809‑M1/91‑1 (MQ=255)

                                                          CACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTaa                                 >  2:2975099‑M1/1‑91 (MQ=255)

                                                          CACCCCCTGAAAATAATGCCTCTATATTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTaa                                 >  1:3686701‑M1/1‑91 (MQ=255)

                                                           aCCCCCTGAAAATAATGCCTCTATTTTGATGCggggtgcacataaataataaaaatcatgcatttgacatatagtaattgaaaagcgtttc                                <  1:424286‑M2/91‑60 (MQ=255)

                                                           ACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTaaa                                >  1:838193‑M1/1‑91 (MQ=255)

                                                            CCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAAt                               >  2:1603827‑M1/1‑91 (MQ=255)

                                                            CCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAAt                               >  1:2967624‑M1/1‑91 (MQ=255)

                                                             CCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATg                              <  1:3547323‑M1/91‑1 (MQ=255)

                                                              CCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGt                             >  1:3092170‑M1/1‑91 (MQ=255)

                                                               acTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTc                            <  2:3930635/90‑1 (MQ=255)

                                                                cTGAAAATAATGCCTCTATTTTGATGCggggtgcacataaataataaaaatcatgcatttgacatatagtaattgaaaagcgtttcaattc                           <  2:967205‑M2/91‑65 (MQ=255)

                                                                cTGAAAATAATGCCTCTATTTTGATGCggggtgcacataaataataaaaatcatgcatttgacatatagtaattgaaaagcgtttcaattc                           <  1:218350‑M2/91‑65 (MQ=255)

                                                                cTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCg                           <  2:2393774/91‑1 (MQ=255)

                                                                cTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCg                           <  1:780309/91‑1 (MQ=255)

                                                                 tGAAAATAATGCCTCTATTTTGATGCggggtgcacataaataataaaaatcatgcatttgacatatagtaattgaaaagcgtttcaattca                          <  2:3693587‑M2/91‑66 (MQ=255)

                                                                 tGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGa                          >  2:606823/1‑91 (MQ=255)

                                                                 tGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGa                          >  1:2916077/1‑91 (MQ=255)

                                                                   aaaaTAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAg                        >  1:1226079/1‑91 (MQ=255)

                                                                     aataatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGga                      >  1:1172948/1‑91 (MQ=255)

                                                                     aataatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGga                      >  1:2561068/1‑91 (MQ=255)

                                                                       taatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGgaga                    <  2:636861/91‑1 (MQ=255)

                                                                       taatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTAAATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGgaga                    >  1:3417429/1‑91 (MQ=255)

                                                                        aatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGAt                   <  1:513350/91‑1 (MQ=255)

                                                                        aatGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGAt                   <  1:612905/91‑1 (MQ=255)

                                                                         atGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATg                  >  2:2427176/1‑91 (MQ=255)

                                                                         atGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATg                  >  1:2261293/1‑91 (MQ=255)

                                                                          tGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGa                 >  2:1344044/1‑91 (MQ=255)

                                                                            ccTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGaaa               >  2:3794302/1‑91 (MQ=255)

                                                                               ctATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCg            >  1:1880093/1‑91 (MQ=255)

                                                                               ctATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCg            <  1:3568737/91‑1 (MQ=255)

                                                                                 aTTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTg          <  1:610478/91‑1 (MQ=255)

                                                                                  ttttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTgg         >  1:254064/1‑91 (MQ=255)

                                                                                  ttttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTgg         <  2:3756519/91‑1 (MQ=255)

                                                                                  ttttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTgg         <  1:2120952/91‑1 (MQ=255)

                                                                                  ttttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTgg         <  1:1244864/91‑1 (MQ=255)

                                                                                    ttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGaa       >  2:2719534/1‑91 (MQ=255)

                                                                                    ttGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGaa       >  2:1820607/1‑91 (MQ=255)

                                                                                      gATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGaaaa     <  1:1348611/91‑1 (MQ=255)

                                                                                      gATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGaaaa     <  1:323721/91‑1 (MQ=255)

                                                                                        tGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGAAAATa   >  1:2717752/1‑91 (MQ=255)

                                                                                         gCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGAAAATAc  >  2:1867412/1‑91 (MQ=255)

GAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTATGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATATTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGAAAATAC  >  USA300TCH1516_ALE/1177484‑1177663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.