| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1439024 | 187 (0.920) | 22 (0.120) | 11/146 | NT | 11.4% | intergenic (+22/+218) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1439047 | 170 (0.920) | intergenic (+45/+195) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
Only 100 of 321 total aligned reads displayed.
ATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGA > USA300TCH1516_ALE/1438935‑1439114 | aTGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTTATCCCCGaa < 1:1982726/91‑1 (MQ=255) tGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAg > 1:2711685/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGGCAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 2:353207/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtc > 2:1951347‑M1/1‑88 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 1:2112442/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 2:313030/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 1:2884359/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 1:2803377/1‑91 (MQ=255) gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca > 1:209589/1‑91 (MQ=255) gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca > 1:2037367/1‑91 (MQ=255) aaaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcaca > 2:2430737/1‑91 (MQ=255) aaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAg < 1:2592215/91‑1 (MQ=255) aaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAg < 1:3065819/91‑1 (MQ=255) gCACGTGAAGTAATAAAGCGACAATTGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaa < 2:3715613/91‑1 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 2:484729/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 2:2525155/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 1:104826/1‑91 (MQ=255) aaGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATtata > 2:2357237/1‑91 (MQ=255) tgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACt > 2:3317616‑M1/67‑91 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtg < 1:427662/91‑1 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgc < 1:2518606‑M1/91‑23 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgc < 1:2761017‑M1/91‑23 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGa < 1:3226936/91‑1 (MQ=255) ccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTc > 2:1310314‑M1/60‑91 (MQ=255) aGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtc > 2:2170094‑M2/1‑89 (MQ=255) gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg > 2:3049325‑M2/1‑86 (MQ=255) ttttagagtatatgtacaagcatgttttctacagtcatctataatgcataaaaatTCCCCGTAGCACAGAAAATTATACTGTGACTCgggg > 2:3436592‑M1/56‑91 (MQ=255) aCAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggg > 1:1557469‑M2/1‑85 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACGAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga > 2:3050474‑M2/1‑84 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga < 2:753080‑M2/91‑8 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga > 1:3722967‑M2/1‑84 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga < 2:1092288‑M2/91‑8 (MQ=255) tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt > 2:2775238/1‑91 (MQ=255) gTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtttt < 2:3851936/91‑1 (MQ=255) ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt < 2:629044/91‑1 (MQ=255) tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa > 2:2098250/1‑91 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAGGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGCAATTTTTAt > 1:3778958/1‑91 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt < 1:2301581/91‑1 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt > 2:2494647/1‑91 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 1:1450947/91‑1 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 1:3403395/91‑1 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 1:994659/91‑1 (MQ=255) aCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATCTTTATGCa > 2:1137390/1‑91 (MQ=255) aaCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAtt > 2:2685935/1‑91 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGGAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta < 2:3834795/91‑1 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta > 1:850317/1‑91 (MQ=255) tCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtata < 1:524534/91‑1 (MQ=255) tCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtata < 2:795094/91‑1 (MQ=255) cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtataa > 2:3925733/1‑90 (MQ=255) cATTAATAATGATACAAAAAAAAAATAAACAAAGTAATCCCCGAAGCACAAAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg < 2:567110/91‑1 (MQ=255) ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt < 2:417210/91‑1 (MQ=255) ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt > 2:1615475/1‑91 (MQ=255) attaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGGAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGa < 2:3051026/91‑1 (MQ=255) ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc < 1:1069969/91‑1 (MQ=255) taATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACt > 1:541447/1‑91 (MQ=255) aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt > 1:3571709/1‑91 (MQ=255) aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt > 1:1359361/1‑91 (MQ=255) tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa > 2:2010645/1‑91 (MQ=255) tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa > 1:2164826/1‑91 (MQ=255) gATACAAAATATAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg < 1:3582209/91‑1 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 2:116122/91‑1 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 2:2263354/91‑1 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 1:1035396/91‑1 (MQ=255) aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa > 1:880011/1‑91 (MQ=255) aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa < 1:635451/91‑1 (MQ=255) cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa < 1:402953/91‑1 (MQ=255) aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc > 1:3260466/1‑91 (MQ=255) aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc > 2:3758117/1‑91 (MQ=255) aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa < 2:932884/91‑1 (MQ=255) aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt > 1:3832510/1‑91 (MQ=255) ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg < 1:1119976/91‑1 (MQ=255) taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc > 1:2454680/1‑91 (MQ=255) aaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACat > 2:3320208/1‑91 (MQ=255) aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata > 1:1808517/1‑91 (MQ=255) aaGTACTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc < 1:3684121/91‑1 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 2:1376532/1‑91 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 1:2963393/1‑91 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct < 1:3302610/91‑1 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc > 1:1905471/1‑91 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc > 1:700909/1‑91 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc < 1:582890/91‑1 (MQ=255) tAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActct < 2:907092/91‑1 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:1734542/1‑91 (MQ=255) tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg > 1:3941412‑M1/1‑7 (MQ=255) tCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg < 2:3077393‑M2/91‑62 (MQ=255) ccccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgt > 2:2965277‑M1/1‑6 (MQ=255) CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa > 2:153515‑M1/1‑91 (MQ=255) CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa > 2:1101861‑M1/1‑91 (MQ=255) CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa > 1:933198‑M1/1‑91 (MQ=255) cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc < 1:1263818‑M1/91‑87 (MQ=255) cccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc < 2:1058329‑M1/91‑87 (MQ=255) ccGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg < 2:715759‑M1/91‑88 (MQ=255) ccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg < 1:2567796‑M2/91‑65 (MQ=255) ccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg < 2:1010029‑M2/91‑65 (MQ=255) CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa < 2:1682333‑M1/91‑1 (MQ=255) CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa < 1:3758749‑M1/91‑1 (MQ=255) CGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg < 1:2214424‑M1/91‑1 (MQ=255) gAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgct < 2:3046695‑M1/91‑90 (MQ=255) GAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAgg > 1:2014779‑M1/1‑91 (MQ=255) AAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGa < 2:3227250‑M1/91‑1 (MQ=255) | ATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGA > USA300TCH1516_ALE/1438935‑1439114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |