BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1439024	187 (0.920)	22 (0.120)	11/146	NT	11.4%	intergenic (+22/+218)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1439047	170 (0.920)	22 (0.120)	11/146	NT	11.4%	intergenic (+45/+195)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 260 total aligned reads displayed.

AGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGA  >  USA300TCH1516_ALE/1438959‑1439137

aGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtc                                                                                          <  2:3046695‑M2/91‑3 (MQ=255)

  cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg                                                                                        >  2:1027701‑M2/1‑87 (MQ=255)

   tttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCggg                                                                                       >  1:2515547‑M1/57‑91 (MQ=255)

   gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                       <  1:1263818‑M2/91‑6 (MQ=255)

   gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                       <  2:1058329‑M2/91‑6 (MQ=255)

     cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACGAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                     >  2:3050474‑M2/1‑84 (MQ=255)

     cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                     >  1:3941412‑M2/1‑84 (MQ=255)

     cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                     <  2:753080‑M2/91‑8 (MQ=255)

     cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                     <  2:1092355‑M2/91‑8 (MQ=255)

       aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                   >  1:2727556/1‑91 (MQ=255)

       aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                   >  1:456815/1‑91 (MQ=255)

       aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGCGAAt                                                                                   >  2:1665710/1‑91 (MQ=255)

        tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGCAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                  >  1:3241359/1‑91 (MQ=255)

        tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                  >  2:2775238/1‑91 (MQ=255)

          gTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtttt                                                                                <  2:3851936/91‑1 (MQ=255)

            tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                                              >  2:164354/1‑91 (MQ=255)

             aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                                             >  2:2494647/1‑91 (MQ=255)

              aGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGGAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATg                                                                            <  1:1690050/91‑1 (MQ=255)

               gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                           >  1:1533312/1‑91 (MQ=255)

               gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                           <  1:994676/91‑1 (MQ=255)

                aCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCa                                                                          >  2:1136672/1‑91 (MQ=255)

                 cAACTCATTATTAATGATACAAACTAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                         <  2:603643/91‑1 (MQ=255)

                   aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGGAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       <  2:3834795/91‑1 (MQ=255)

                   aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  1:2774837/1‑91 (MQ=255)

                   aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  1:850317/1‑91 (MQ=255)

                   aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  2:2339988/1‑91 (MQ=255)

                   aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                       >  2:1182982/1‑91 (MQ=255)

                     tCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtata                                                                     >  2:714270/1‑91 (MQ=255)

                       attattAATGATACAAAATAAAAATAAACAAAGTAATCCCAGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGa                                                                   >  2:854421/1‑91 (MQ=255)

                        ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt                                                                  <  2:417210/91‑1 (MQ=255)

                        ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt                                                                  >  1:2154061/1‑91 (MQ=255)

                          attaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGGAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGa                                                                <  2:3051026/91‑1 (MQ=255)

                              aTGATACAAAATAAAAATAAACATAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                            <  1:549579/91‑1 (MQ=255)

                              aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                            >  1:1359361/1‑91 (MQ=255)

                              aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                            >  1:3571709/1‑91 (MQ=255)

                                gATACAAAATATAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                          <  1:3582209/91‑1 (MQ=255)

                                 aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa                                                         <  1:1035396/91‑1 (MQ=255)

                                  tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                        <  1:2029678/91‑1 (MQ=255)

                                  tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                        <  2:3397596/91‑1 (MQ=255)

                                   aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                       <  1:635451/91‑1 (MQ=255)

                                   aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                       >  1:2753565/1‑91 (MQ=255)

                                   aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                       >  1:880011/1‑91 (MQ=255)

                                    cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                      <  1:402953/91‑1 (MQ=255)

                                     aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                     <  2:3129270/91‑1 (MQ=255)

                                       aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt                                                   >  1:3832510/1‑91 (MQ=255)

                                       aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt                                                   >  2:3757208/1‑91 (MQ=255)

                                        ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                  <  1:1119976/91‑1 (MQ=255)

                                         taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                                                 >  1:2454680/1‑91 (MQ=255)

                                         taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                                                 <  2:1142382/91‑1 (MQ=255)

                                            aaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                              >  1:3011677/1‑91 (MQ=255)

                                             aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                                             <  1:921357/91‑1 (MQ=255)

                                              ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTCTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                                            >  2:200773/1‑91 (MQ=255)

                                              aatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                                            >  1:340853‑M1/14‑91 (MQ=255)

                                                 aaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACat                                         >  2:3320208/1‑91 (MQ=255)

                                                  aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAGACATGCTTGGACata                                        <  1:3374850/91‑1 (MQ=255)

                                                  aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                                        >  1:1808517/1‑91 (MQ=255)

                                                     aaGTACTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     <  1:3684121/91‑1 (MQ=255)

                                                     aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     <  2:1363108/91‑1 (MQ=255)

                                                     aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     >  1:1890224/1‑91 (MQ=255)

                                                     aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                     >  2:2236921/1‑91 (MQ=255)

                                                      aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGANTGTAGAAAACATGCTTGGACATATAct                                    <  1:3302581/91‑1 (MQ=255)

                                                      aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                    >  1:2963393/1‑91 (MQ=255)

                                                       gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                   >  1:700909/1‑91 (MQ=255)

                                                       gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                   >  1:1905471/1‑91 (MQ=255)

                                                        tAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActct                                  <  2:907092/91‑1 (MQ=255)

                                                          aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                >  1:2011266/1‑91 (MQ=255)

                                                            CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                              >  1:2827870‑M1/1‑91 (MQ=255)

                                                             CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  1:1059160‑M1/91‑1 (MQ=255)

                                                             CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             >  2:2831868‑M1/1‑91 (MQ=255)

                                                             CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                             <  1:313232‑M1/91‑1 (MQ=255)

                                                              ccGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcg                            <  1:2567796‑M2/91‑65 (MQ=255)

                                                              CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa                            <  1:3758749‑M1/91‑1 (MQ=255)

                                                               CGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg                           <  1:2214424‑M1/91‑1 (MQ=255)

                                                               CGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg                           <  2:1608917‑M1/91‑1 (MQ=255)

                                                                 AAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGa                         <  2:3227250‑M1/91‑1 (MQ=255)

                                                                   gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                       >  1:3223146/1‑91 (MQ=255)

                                                                    cacaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaaga                      <  1:3774251/91‑1 (MQ=255)

                                                                      caGAAAATTATACTGTGCTtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataa                    <  2:2419785‑M2/91‑73 (MQ=255)

                                                                      caGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataa                    <  2:2039092‑M2/91‑73 (MQ=255)

                                                                      caGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataa                    <  1:534328‑M2/91‑73 (MQ=255)

                                                                      caGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttataa                    <  2:2685636‑M2/91‑73 (MQ=255)

                                                                      caGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                    <  1:570068/91‑1 (MQ=255)

                                                                       aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                   >  2:2483486/1‑91 (MQ=255)

                                                                        gAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                  >  1:1432300/1‑91 (MQ=255)

                                                                        gAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                  >  1:1643094/1‑91 (MQ=255)

                                                                         aaaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGc                 <  2:2694096/91‑1 (MQ=255)

                                                                         aaaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGc                 <  2:1774645/91‑1 (MQ=255)

                                                                           aaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcac               >  2:44311/1‑91 (MQ=255)

                                                                            aTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcaca              >  2:3098125/1‑91 (MQ=255)

                                                                             ttATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAt             <  2:142702/91‑1 (MQ=255)

                                                                             ttATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAt             <  1:2863892/91‑1 (MQ=255)

                                                                                taCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtttt          >  2:1504636/1‑91 (MQ=255)

                                                                                  cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtttttt        >  2:1907478/1‑90 (MQ=255)

                                                                                  cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta        >  1:2607882/1‑91 (MQ=255)

                                                                                  cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta        >  2:937370/1‑91 (MQ=255)

                                                                                    gtgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagt      >  1:2257366/1‑91 (MQ=255)

                                                                                     tgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACAAAAAAAAAGGAAGAACAGCACATTTttagtt     <  2:3647051/91‑1 (MQ=255)

                                                                                      gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta    >  1:2390998/1‑91 (MQ=255)

                                                                                      gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta    <  2:352078/91‑1 (MQ=255)

                                                                                        cTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGACCAGCACATTCTTAGTTAGa  >  2:211525/1‑91 (MQ=255)

AGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGA  >  USA300TCH1516_ALE/1438959‑1439137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.