| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1665337 = | 88 (0.430) | 28 (0.200) | 9/108 | NT | 32.7% | intergenic (‑212/+65) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | 1665405 = | 56 (0.410) | coding (408/411 nt) | zur | Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 315 total aligned reads displayed.
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAC > USA300TCH1516_ALE/1665247‑1665427 | cAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT < 1:3822441‑M1/91‑1 (MQ=255) aaaaTAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAA < 2:2897803‑M1/91‑1 (MQ=255) atagatcagataaaattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAat < 1:343846‑M1/4‑1 (MQ=255) atagatcagataaaattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAat > 2:2957729‑M1/88‑91 (MQ=255) agataattaAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT < 2:3454838‑M1/89‑1 (MQ=255) aaaTAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT > 2:376379‑M1/1‑91 (MQ=255) aataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATA > 1:3834634‑M1/1‑91 (MQ=255) ataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATAT < 1:597167‑M1/91‑1 (MQ=255) gatcagataaaagtatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAAtata > 2:777232‑M1/85‑91 (MQ=255) atcagataaaattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATaa > 1:304739‑M1/84‑91 (MQ=255) ttAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAG > 2:3799048‑M1/1‑91 (MQ=255) aaaCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAA > 1:738978‑M1/1‑91 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 2:313582‑M1/91‑1 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 1:627021‑M1/91‑1 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT > 2:3886521‑M1/1‑91 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 2:43925‑M1/91‑1 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT > 2:829450‑M1/1‑91 (MQ=255) aCATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 1:1015781‑M1/91‑1 (MQ=255) cATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATG > 2:1910105‑M1/1‑91 (MQ=255) aaaattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATg > 1:1152156‑M1/77‑91 (MQ=255) aaattatcactacctggtgttaatatgcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATga > 2:2080257‑M1/76‑91 (MQ=255) ttgtgtaTATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAG < 2:3302978‑M1/88‑1 (MQ=255) aattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATgag < 2:2936065‑M1/17‑1 (MQ=255) aattatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATgag < 2:393723‑M1/17‑1 (MQ=255) ttatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGAt > 2:181192‑M1/73‑91 (MQ=255) ttatcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGAt < 2:3248834‑M1/19‑1 (MQ=255) ttGTATATACAAAGTTAACAGATTTGCCATAAAATCATATGAACGGAGTATGAACTGAACCTTTATCTTCTATAATATAAAGAAATGAGAa > 2:3345670‑M1/1‑90 (MQ=255) ttGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT > 1:2629770‑M1/1‑91 (MQ=255) ttGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT < 2:3897673‑M1/91‑1 (MQ=255) tGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATT > 1:3759335‑M1/1‑91 (MQ=255) gTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTT > 2:3459184‑M1/1‑91 (MQ=255) tcactacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTa > 1:302955‑M1/70‑91 (MQ=255) tcactacctggtgttaatattcacaaacacaaacttgaagattatgacgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTa < 2:3549735‑M1/22‑1 (MQ=255) atataAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTAT < 1:2258699‑M1/91‑1 (MQ=255) tataAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATG < 1:1358730‑M1/91‑1 (MQ=255) tacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCa > 2:1725954‑M1/66‑91 (MQ=255) aaaaaGTTAACAGATTTGCCATAAGATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAt < 2:3685229/91‑1 (MQ=255) aaaaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAt < 1:2716631/91‑1 (MQ=255) aaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATAc < 2:2442546/91‑1 (MQ=255) aaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAATTATGCATAc > 2:1570494/1‑91 (MQ=255) aaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACa > 1:2343956/1‑91 (MQ=255) gTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATc > 2:2262180/1‑91 (MQ=255) ttAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCt < 1:249511/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 2:2617550/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 2:1357282/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 1:75695/91‑1 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa > 1:211583/1‑91 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa > 1:2414130/1‑91 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc < 2:733015/91‑1 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc > 2:697586/1‑91 (MQ=255) cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAcc > 1:1420820/1‑91 (MQ=255) cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAcc > 1:2604273/1‑91 (MQ=255) aGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCa < 1:926212/91‑1 (MQ=255) ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg < 1:1263395/91‑1 (MQ=255) ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg < 1:1827155/91‑1 (MQ=255) cacaaacacagacttgacgtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgt > 1:3392657‑M1/49‑91 (MQ=255) cacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgt > 2:3381413‑M1/49‑91 (MQ=255) gCCATAAGATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 2:1234882‑M2/1‑89 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATCTAAATAAATGAGATTTATGCAcatttggtcagatgtatg < 2:2335656‑M1/91‑19 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 2:2372809‑M2/1‑89 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 1:1923714‑M2/1‑89 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAAACTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 2:1098486‑M2/1‑89 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgc < 1:2670390‑M1/91‑20 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc < 2:3212116‑M2/91‑4 (MQ=255) caaacacaaacttgaagtttatggtgtatgtgagtcttgccaagaaTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGc > 1:1485161‑M1/47‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:2234390‑M1/45‑91 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat < 2:2317713‑M1/91‑22 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccatgatTAATATAAAGATATGAGATTTATGCATAGATCTGATCAAATTTGCATa > 2:2149899‑M1/44‑91 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:123312‑M1/44‑91 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:2859353‑M1/44‑91 (MQ=255) aaTGATACGTACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaat > 1:3554610‑M2/1‑82 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 2:3605900‑M2/1‑81 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct > 2:2656138‑M2/1‑80 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct < 1:506165‑M2/91‑12 (MQ=255) aTACGAACGGAATATGAAACAAGCCTTTATCTTCTATAATATAAAGAAATGATATTTATGCATACATCTGACCAAAAGtgcataaatctca > 2:1870545‑M2/1‑78 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2446935‑M2/91‑15 (MQ=255) cGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcattt > 1:1868424‑M2/1‑75 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttct < 1:1309398‑M2/91‑19 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt > 2:3012026‑M2/1‑72 (MQ=255) aGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttata > 1:357008‑M2/1‑68 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:1900552‑M2/1‑67 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat < 1:3599747‑M2/91‑25 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt > 2:273726‑M2/1‑66 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 1:207759/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt > 1:2763282/1‑91 (MQ=255) atgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCtt < 1:982192/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:1748109/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:3206312/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:423602/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 2:160631/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 1:1572502/91‑1 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt > 2:2172255/1‑91 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 2:1302588/91‑1 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 2:1381713/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc > 2:322344/1‑91 (MQ=255) tctATAATATAAATAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACAt < 2:582746/91‑1 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:3309288/1‑91 (MQ=255) tataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGGCTCACATac < 2:2420780/91‑1 (MQ=255) tataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATac < 1:580846/91‑1 (MQ=255) taatataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcat < 1:2571549‑M1/91‑66 (MQ=255) | CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAC > USA300TCH1516_ALE/1665247‑1665427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |