| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1665337 = | 88 (0.430) | 28 (0.200) | 9/108 | NT | 32.7% | intergenic (‑212/+65) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | 1665405 = | 56 (0.410) | coding (408/411 nt) | zur | Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 194 total aligned reads displayed.
TGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTATTG > USA300TCH1516_ALE/1665315‑1665493 | gaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAAt > 1:1988723/1‑91 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt > 1:2763282/1‑91 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 2:3387183/91‑1 (MQ=255) atgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCtt < 1:982192/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg > 2:2408877/1‑91 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:423602/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 2:160631/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:2253382/91‑1 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa > 2:2415376/1‑91 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 1:3763479/91‑1 (MQ=255) cTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAg < 2:460163/91‑1 (MQ=255) tttATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGa > 1:185241/1‑91 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 2:1302588/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc > 2:322344/1‑91 (MQ=255) tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 2:2594511/91‑1 (MQ=255) ttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTCTATTAATCTTGGCAAGACTcacc > 2:3308620/1‑90 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACAtc > 2:3536899/1‑90 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:3398272/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:3309288/1‑91 (MQ=255) ataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATaca < 2:3474892/91‑1 (MQ=255) TATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt > 2:745402‑M1/1‑91 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc > 1:1013049‑M1/1‑91 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 2:1029005‑M1/91‑1 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 2:2739496‑M1/91‑1 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 2:2179003‑M1/1‑91 (MQ=255) AAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTc < 2:2651346‑M1/91‑1 (MQ=255) AAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTc < 1:226034‑M1/91‑1 (MQ=255) ATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCaa > 1:3733284‑M1/1‑91 (MQ=255) ATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCACAaacttgaa > 1:2953013‑M1/1‑88 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 1:1421291‑M1/1‑91 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:2413436‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 1:157393‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:3371941‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt < 1:3007280‑M1/91‑1 (MQ=255) AGATTTATGCATACATCTGACCAAATGGGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGGCTCACATACACCATAAGCTTCAAgtt > 2:1809078‑M1/1‑91 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:1513901‑M1/91‑1 (MQ=255) TTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgt > 1:959430‑M1/1‑91 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg > 1:2251217‑M1/1‑91 (MQ=255) tatgcaaatttgatcagatctatgcataaatctcatatctttatattaATCATGGCAAGACTCACATACACCATAAACTTCAAgtttgtgt > 2:2149899‑M2/49‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 1:1563875‑M2/48‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 1:2234381‑M2/48‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 2:686774‑M2/48‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 2:2204503‑M2/48‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 1:592375‑M2/48‑91 (MQ=255) atgcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 2:3374716‑M2/48‑91 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:3714747‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 2:188502‑M1/91‑1 (MQ=255) gcacatttggtcagatgtatgcataaatctcatttctttatattaTTCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg > 1:1485161‑M2/46‑91 (MQ=255) gcacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg > 1:129813‑M2/46‑91 (MQ=255) cacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 2:1852025‑M2/45‑91 (MQ=255) cacatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 1:597815‑M2/45‑91 (MQ=255) acatttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACGTCAAGtctgtgtttgtg > 1:3392657‑M2/44‑91 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 2:3872839‑M1/91‑1 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 1:2769485‑M1/91‑1 (MQ=255) tACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGa > 1:2855229/1‑91 (MQ=255) catttggtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGa > 1:2086033‑M2/43‑91 (MQ=255) cATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAATACTCACATACACCATAAACTTCAATTTTGTGTTTGTGAat < 2:363297/91‑1 (MQ=255) cATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAat < 1:3108749/91‑1 (MQ=255) aTCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAata < 2:349312/91‑1 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat > 2:591955/1‑91 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat < 1:2339653/91‑1 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat < 2:568050/91‑1 (MQ=255) tGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTa > 1:1357605/1‑91 (MQ=255) gtcagatgtatgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTa > 2:1154775‑M2/37‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 1:2585851/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:154901/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1175893/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac < 2:2328537/91‑1 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCACGTTTGTGTTTGTGAATATTAACAccc > 2:2912433/1‑90 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCa > 2:3750516/1‑91 (MQ=255) tgtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAgg < 2:1973352/91‑1 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt < 1:2457766/91‑1 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt > 1:2747102/1‑91 (MQ=255) tgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCACGTTTGTGTTTGTGAATATTAACACCAGGTa > 2:2881499‑M2/27‑91 (MQ=255) tgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTa > 2:1725954‑M2/27‑91 (MQ=255) tgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTa < 1:3105174‑M2/65‑1 (MQ=255) tgcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTa > 1:1256438‑M2/27‑91 (MQ=255) gcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGCATATTAAAACCAGGTAg > 2:3455000‑M2/26‑91 (MQ=255) gcataaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAg > 1:576272‑M2/26‑91 (MQ=255) taaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGa < 2:3549914‑M2/69‑1 (MQ=255) taaatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTCTGTGTTTGTGAATATTAACACCAGGCAGTGa > 2:961415‑M2/23‑91 (MQ=255) aatctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATa < 2:757086‑M2/71‑1 (MQ=255) atctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATaa < 2:3248834‑M2/72‑1 (MQ=255) ctcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAAtt < 2:393723‑M2/74‑1 (MQ=255) tcatttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGCATATTAACACCAGGTAGTGATAAttt > 2:2080257‑M2/17‑91 (MQ=255) catttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAAtttt > 1:1152156‑M2/16‑91 (MQ=255) atttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTa > 2:312030‑M2/15‑91 (MQ=255) atttctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTa > 1:1917098‑M2/15‑91 (MQ=255) ctttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTg > 2:1315082‑M2/11‑91 (MQ=255) tttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGa < 1:2045477‑M2/82‑1 (MQ=255) tttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGa > 2:2441394‑M2/10‑91 (MQ=255) ttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGAt > 1:304739‑M2/9‑91 (MQ=255) ttatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGAt < 2:2332299‑M2/83‑1 (MQ=255) tatattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATACTTTTATCTGATc > 2:777232‑M2/8‑91 (MQ=255) tattaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTa > 1:719182‑M2/6‑91 (MQ=255) attaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAt < 1:343846‑M2/87‑1 (MQ=255) attaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAt > 2:2957729‑M2/5‑91 (MQ=255) ttaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAtt > 1:2790698‑M2/4‑91 (MQ=255) ttaATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAtt > 1:2282653‑M2/4‑91 (MQ=255) ttaATCTTGGCAAGACCCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTAtt > 1:3667391‑M2/4‑91 (MQ=255) | TGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGTAGTGATAATTTTATCTGATCTATTG > USA300TCH1516_ALE/1665315‑1665493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |