BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1759680	163 (0.800)	16 (0.100)	11/132	NT	10.6%	intergenic (‑387/+87)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1759708	136 (0.810)	16 (0.100)	11/132	NT	10.6%	intergenic (‑415/+59)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein

Only 100 of 314 total aligned reads displayed.

GTTGCTCGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTAC  >  USA300TCH1516_ALE/1759590‑1759770

gTTGCTCGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGT                                                                                            <  2:680192‑M1/91‑1 (MQ=255)

     tCGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAg                                                                                       >  1:3878771/1‑91 (MQ=255)

     tCGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAg                                                                                       >  1:2541859/1‑91 (MQ=255)

      cGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGt                                                                                      >  2:2564067/1‑91 (MQ=255)

       gATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGtt                                                                                     <  1:121027/91‑1 (MQ=255)

       gATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGtt                                                                                     <  2:2285636/91‑1 (MQ=255)

       gATTTTTTTCAAATAAATAGTGGATTTTTACAGCACTTTCAATTTAACAATTAACTTTATTCTGCATAACAAAACTCCTAATGTACTAGtt                                                                                     <  1:3566829/91‑1 (MQ=255)

        aTTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGttt                                                                                    >  1:1857312/1‑91 (MQ=255)

         tttttttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTa                                                                                   >  1:3624076/1‑91 (MQ=255)

          ttttttCAAATAAATAGTGGGTTTTTACCGCACTTTCAATTTAACAATTAAATTTCTTCTGCATAACAAAACTCCTAATGTACTCGCTTAg                                                                                  >  1:962516/1‑91 (MQ=255)

          ttttttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAg                                                                                  <  2:2342072/91‑1 (MQ=255)

          ttttttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAg                                                                                  <  1:2660234/91‑1 (MQ=255)

           tttttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGa                                                                                 <  1:1007044/91‑1 (MQ=255)

           tttttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGa                                                                                 <  1:66623/91‑1 (MQ=255)

             tttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAt                                                                               <  1:1368860/91‑1 (MQ=255)

              ttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAtt                                                                              <  1:1515830/91‑1 (MQ=255)

              ttCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAtt                                                                              >  1:1792727/1‑91 (MQ=255)

                cAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAtttt                                                                            >  1:158874/1‑91 (MQ=255)

                cAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAtttt                                                                            <  1:864139/91‑1 (MQ=255)

                  aataaataGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAAtttttt                                                                          <  2:2104126/91‑1 (MQ=255)

                     aaataGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTggaactagttaaaaaattcta                                                                       <  1:2971428‑M1/91‑22 (MQ=255)

                      aataGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACt                                                                      >  2:1341599/1‑91 (MQ=255)

                        taGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAg                                                                    <  1:1174813/91‑1 (MQ=255)

                        cgtaagtaatagtaatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAg                                                                    >  1:473737‑M1/54‑91 (MQ=255)

                         aGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGt                                                                   <  1:2085971/91‑1 (MQ=255)

                         aGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGt                                                                   <  2:3067771/91‑1 (MQ=255)

                          gTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGtt                                                                  >  1:718163/1‑91 (MQ=255)

                            ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                <  2:583575/91‑1 (MQ=255)

                            ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                >  2:2637225/1‑91 (MQ=255)

                              aTTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTggaactagttaaaaaattctaaactagtac                                                              <  1:3058867‑M1/91‑31 (MQ=255)

                                   tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                         <  1:637909‑M2/91‑8 (MQ=255)

                                   tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                         <  2:1830200‑M2/91‑8 (MQ=255)

                                    aCCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTggaactagttaaaaaattctaaactagtacattagg                                                        <  1:963657‑M1/91‑37 (MQ=255)

                                      cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                      <  2:2619901‑M2/91‑11 (MQ=255)

                                      cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                      >  2:3196196‑M2/1‑81 (MQ=255)

                                       gCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagt                                                     <  1:2993336‑M2/91‑12 (MQ=255)

                                       gCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagt                                                     >  1:1643776‑M2/1‑80 (MQ=255)

                                        cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                    <  1:996101‑M2/91‑13 (MQ=255)

                                        cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                    <  2:2469704‑M2/91‑13 (MQ=255)

                                         aCTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttt                                                   >  2:3954231‑M2/1‑78 (MQ=255)

                                         aCTGTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTGAGAATTTTTTAACTAGTTCCacattaggagttt                                                   >  1:338971‑M2/1‑78 (MQ=255)

                                          cTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtttt                                                  <  1:2145665‑M2/91‑15 (MQ=255)

                                           tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttg                                                 <  1:3458740‑M1/91‑44 (MQ=255)

                                           tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                 <  2:3265804/91‑1 (MQ=255)

                                            ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCAAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                <  2:3472339/91‑1 (MQ=255)

                                             tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                               <  1:1064592/91‑1 (MQ=255)

                                               aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                             <  2:1231987/91‑1 (MQ=255)

                                                   tAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgttt                                         >  1:61018/1‑91 (MQ=255)

                                                   tAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgttt                                         <  1:3942974/91‑1 (MQ=255)

                                                    aaCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGtttt                                        <  1:2836193/91‑1 (MQ=255)

                                                    aaCAATTAAATTTATTCGGCATAACAAAACTCATAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGtttt                                        <  1:3382352/91‑1 (MQ=255)

                                                    aaCAATTAAATTGATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGtttt                                        <  2:3682119/91‑1 (MQ=255)

                                                     aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                       >  2:3319770/1‑91 (MQ=255)

                                                       aaTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCaa                                     <  2:1635805/91‑1 (MQ=255)

                                                          tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                  >  1:2041459/1‑91 (MQ=255)

                                                           aaaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCAc                                 <  1:1485750/91‑1 (MQ=255)

                                                            aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                <  1:378787/91‑1 (MQ=255)

                                                             aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                               >  2:3743233/1‑91 (MQ=255)

                                                             aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                               <  2:2751428/91‑1 (MQ=255)

                                                             aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                               <  2:224147/91‑1 (MQ=255)

                                                              tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                              <  1:2404858/91‑1 (MQ=255)

                                                              tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                              <  1:2735853/91‑1 (MQ=255)

                                                                tATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAta                            <  2:1825997/91‑1 (MQ=255)

                                                                 aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                           <  2:2071490/91‑1 (MQ=255)

                                                                    cTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtactac                        <  1:2988559/91‑1 (MQ=255)

                                                                      gCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACtt                      >  2:1928216/1‑91 (MQ=255)

                                                                        aTAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtga                    <  2:48368/91‑1 (MQ=255)

                                                                         tAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgat                   <  1:1460018/91‑1 (MQ=255)

                                                                         tAACAAAACTCATAATGTACTAGCTTAGAATTTTTTAACTAGTTCCACAGTAGGAGTTTGAGTTTGTTTTCAAGCACGGATACTACTtgat                   <  2:3008278/91‑1 (MQ=255)

                                                                          aaCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatg                  <  1:133483/91‑1 (MQ=255)

                                                                              aaaCTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagt              >  1:339214‑M1/1‑13 (MQ=255)

                                                                              AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa              <  2:949887‑M1/91‑1 (MQ=255)

                                                                              AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa              <  1:496082‑M1/91‑1 (MQ=255)

                                                                              AAACTAATAATGTAAGAGTTTAGAATTTTTTAACAAGTTCGACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa              >  2:1407908‑M1/1‑91 (MQ=255)

                                                                               aaCTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtg             >  1:3267896‑M1/1‑12 (MQ=255)

                                                                                aCTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgc            <  2:3204271‑M1/91‑81 (MQ=255)

                                                                                ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa            <  1:785740‑M1/91‑1 (MQ=255)

                                                                                ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa            >  1:206918‑M1/1‑91 (MQ=255)

                                                                                 cTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcg           >  2:264922‑M1/1‑10 (MQ=255)

                                                                                 cTCCTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcg           >  2:3417724‑M1/1‑10 (MQ=255)

                                                                                 cTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcg           <  1:200283‑M2/91‑54 (MQ=255)

                                                                                  tCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagctttgttatgcagaataaatttaattgttaaattgaaagtgcgg          <  2:3463802‑M2/91‑55 (MQ=255)

                                                                                   ccTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggt         <  1:2512816‑M1/91‑84 (MQ=255)

                                                                                   CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAATCACGGATACTACTTGATGAACAGatta         <  2:1315909‑M1/91‑1 (MQ=255)

                                                                                   CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAGCAGatta         <  1:1959926‑M1/91‑1 (MQ=255)

                                                                                    cTAATGTggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggta        >  1:1605168‑M1/1‑7 (MQ=255)

                                                                                    CTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattac        >  2:1442402‑M1/1‑91 (MQ=255)

                                                                                    CTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattac        <  2:1572963‑M1/91‑1 (MQ=255)

                                                                                     TAATGTACTAGGTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact       <  2:1136641‑M1/91‑1 (MQ=255)

                                                                                      AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta      <  2:2196545‑M1/91‑1 (MQ=255)

                                                                                      AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta      <  2:2832203‑M1/91‑1 (MQ=255)

                                                                                       ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat     <  2:3187868‑M1/91‑1 (MQ=255)

                                                                                       ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat     <  1:442699‑M1/91‑1 (MQ=255)

                                                                                        TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt    <  2:2440736‑M1/91‑1 (MQ=255)

                                                                                         ttggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaat   <  2:3913445‑M1/90‑90 (MQ=255)

                                                                                         gTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaat   <  1:3059064‑M2/91‑62 (MQ=255)

                                                                                         GTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatta   >  2:3620718‑M1/1‑91 (MQ=255)

                                                                                         GTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatta   <  2:1667029‑M1/91‑1 (MQ=255)

                                                                                         GTACTAGTTTAGAATTTGTTAACTAGTTCCACATTAGGAGTGTTAGTTTGTTTTCTAGTACGGGTACTACTTGATGAACAGattactatta   >  2:91541‑M1/1‑91 (MQ=255)

                                                                                          tggaactagttaaaaaattctaaactagtacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatc  <  2:1539538‑M1/91‑91 (MQ=255)

GTTGCTCGATTTTTTTCAAATAAATAGTGGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTAC  >  USA300TCH1516_ALE/1759590‑1759770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.