BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1759680	163 (0.800)	16 (0.100)	11/132	NT	10.6%	intergenic (‑387/+87)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1759708	136 (0.810)	16 (0.100)	11/132	NT	10.6%	intergenic (‑415/+59)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein

Only 100 of 256 total aligned reads displayed.

GGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAAT  >  USA300TCH1516_ALE/1759618‑1759797

ggATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                           >  1:1894662/1‑91 (MQ=255)

agtaatagtaatgtgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTcc                                                                                           >  2:3293963‑M1/50‑91 (MQ=255)

 gATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCa                                                                                          <  2:1539538‑M2/91‑2 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                    >  1:1605168‑M2/1‑84 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                    <  1:637909‑M2/91‑8 (MQ=255)

       tACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattag                                                                                    <  2:1830200‑M2/91‑8 (MQ=255)

        taatctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAgg                                                                                   >  2:2755377‑M1/42‑91 (MQ=255)

          cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                                                 >  2:264922‑M2/1‑81 (MQ=255)

          cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                                                 <  2:2619901‑M2/91‑11 (MQ=255)

          cGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggag                                                                                 >  2:3196196‑M2/1‑81 (MQ=255)

          atctgttcatcaagtagtatccgtgcttgaaaacaaactAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAg                                                                                 >  1:818760‑M1/40‑91 (MQ=255)

           gCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagt                                                                                <  1:2993336‑M2/91‑12 (MQ=255)

            cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                                               <  2:2469704‑M2/91‑13 (MQ=255)

            cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                                               >  2:1442019‑M2/1‑79 (MQ=255)

            cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                                               <  1:997528‑M2/91‑13 (MQ=255)

            cACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagtt                                                                               >  1:2904621‑M2/1‑79 (MQ=255)

             aCTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttt                                                                              >  1:339214‑M2/1‑78 (MQ=255)

             aCTGTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTGAGAATTTTTTAACTAGTTCCacattaggagttt                                                                              >  1:338971‑M2/1‑78 (MQ=255)

               tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                            <  2:657128/91‑1 (MQ=255)

                ttCCATTTAACTATTAAATTTATTCTGCATAACAATACTTCTAATGTACTAGTTTAGAATTTTTTACCTAGTTCCACATTAGGAGTTTTAg                                                                           <  2:2024977/91‑1 (MQ=255)

                ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCAAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                           <  2:3472339/91‑1 (MQ=255)

                 tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTCGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                                                          <  2:3008988/91‑1 (MQ=255)

                 tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                                                          <  1:1064592/91‑1 (MQ=255)

                  cAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtt                                                                         <  1:119996/91‑1 (MQ=255)

                   aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                        <  2:1231987/91‑1 (MQ=255)

                   aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                        <  1:3635932/91‑1 (MQ=255)

                    aTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttg                                                                       <  1:2509497/91‑1 (MQ=255)

                       tAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgttt                                                                    <  1:1036509/91‑1 (MQ=255)

                       tAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgttt                                                                    <  1:3942974/91‑1 (MQ=255)

                        aaCAATTAAATTGATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGtttt                                                                   <  2:3682119/91‑1 (MQ=255)

                         aCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTc                                                                  >  2:2643132/1‑91 (MQ=255)

                           aaTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCaa                                                                <  2:1635805/91‑1 (MQ=255)

                              tAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCa                                                             >  1:2041459/1‑91 (MQ=255)

                               aaaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCAc                                                            <  1:1485761/91‑1 (MQ=255)

                                aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                           <  1:3034209/91‑1 (MQ=255)

                                aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                           <  1:378787/91‑1 (MQ=255)

                                 aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                                                          >  2:3743233/1‑91 (MQ=255)

                                 aTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACgg                                                          <  2:224138/91‑1 (MQ=255)

                                  tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                                                         <  1:2404858/91‑1 (MQ=255)

                                     aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                      <  2:2071579/91‑1 (MQ=255)

                                      ttCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtact                                                     >  2:2814861/1‑91 (MQ=255)

                                            aTAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtga                                               <  2:48368/91‑1 (MQ=255)

                                             tAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgat                                              <  1:1460018/91‑1 (MQ=255)

                                              aaCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatg                                             <  1:133691/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTATCTTTTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         <  2:386082‑M1/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         <  2:949887‑M1/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         >  1:944739‑M1/1‑91 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         <  1:496082‑M1/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         >  1:3305603‑M1/1‑91 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         <  1:2653241‑M1/91‑1 (MQ=255)

                                                  AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         <  1:706683‑M1/91‑1 (MQ=255)

                                                  AAACTAATAATGTAAGAGTTTAGAATTTTTTAACAAGTTCGACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                         >  2:1407908‑M1/1‑91 (MQ=255)

                                                    ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                       >  1:207219‑M1/1‑91 (MQ=255)

                                                     CTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGat                                      >  2:2375721‑M1/1‑91 (MQ=255)

                                                      tCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagctttgttatgcagaataaatttaattgttaaattgaaagtgcgg                                     <  2:3463802‑M2/91‑55 (MQ=255)

                                                       ccTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggt                                    <  1:963657‑M2/91‑56 (MQ=255)

                                                       CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                    <  2:550897‑M1/91‑1 (MQ=255)

                                                        CTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattac                                   <  2:1572963‑M1/91‑1 (MQ=255)

                                                         tAATGTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaa                                  <  2:2252728‑M2/91‑58 (MQ=255)

                                                         TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                  <  2:1136695‑M1/91‑1 (MQ=255)

                                                          AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta                                 <  2:2196545‑M1/91‑1 (MQ=255)

                                                           ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                <  1:442699‑M1/91‑1 (MQ=255)

                                                            TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                               >  1:3922173‑M1/1‑91 (MQ=255)

                                                             gTACTAGTTTAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaat                              <  1:3059064‑M2/91‑62 (MQ=255)

                                                             GTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatta                              <  2:1666906‑M1/91‑1 (MQ=255)

                                                             GTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatta                              >  2:3620718‑M1/1‑91 (MQ=255)

                                                             GTACTAGTTTAGAATTTGTTAACTAGTTCCACATTAGGAGTGTTAGTTTGTTTTCTAGTACGGGTACTACTTGATGAACAGattactatta                              >  2:91541‑M1/1‑91 (MQ=255)

                                                               aCTAGTTTAGAATTTTTTAACTAGT‑‑cattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatccact                           <  1:571987‑M2/91‑66 (MQ=255)

                                                               aCTAGTTCAGCATTTTTTAACTAGTTCCACATTAGGAGTTTCAGTTTGTTTTCAAGCACGCATACTACTTGATGAACCGattactattacc                            >  2:3398791/1‑90 (MQ=255)

                                                                cTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttactt                           <  1:2185996/91‑1 (MQ=255)

                                                                 tAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttactta                          <  1:2821605/91‑1 (MQ=255)

                                                                 tAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttactta                          >  2:2975697/1‑91 (MQ=255)

                                                                   gTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACg                        <  2:181512/91‑1 (MQ=255)

                                                                   gTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACg                        >  2:1493784/1‑91 (MQ=255)

                                                                      tAGAATTTTTTAACTAGTTCCacattaggagttttgttatgcagaataaatttaattgttaaattgaaagtgcggtaaaaatccactattt                     <  1:2971804‑M2/91‑71 (MQ=255)

                                                                      tAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGccc                     >  1:1762643/1‑91 (MQ=255)

                                                                      tAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGccc                     <  1:1501028/91‑1 (MQ=255)

                                                                       aGAATTTTTTAACTAGTTCCACATTAGGAGTTTCAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                    <  1:3237203/91‑1 (MQ=255)

                                                                        gAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaa                   <  2:2461753/91‑1 (MQ=255)

                                                                            tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGc               <  1:2044018/91‑1 (MQ=255)

                                                                            tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGc               >  1:1482452/1‑91 (MQ=255)

                                                                            tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGc               >  1:2765043/1‑91 (MQ=255)

                                                                            tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGc               >  2:1540108/1‑91 (MQ=255)

                                                                            tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACGTACGCCCAAATGc               <  2:3172440/91‑1 (MQ=255)

                                                                              tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt             <  1:2003642/91‑1 (MQ=255)

                                                                              tttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGt             <  1:2004425/91‑1 (MQ=255)

                                                                               ttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGtt            >  2:108280/1‑91 (MQ=255)

                                                                                tAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTa           <  2:1322067/91‑1 (MQ=255)

                                                                                 aaCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAg          <  2:2393095/91‑1 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa         >  1:2201911/1‑91 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa         >  1:2730175/1‑91 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa         >  2:3946941/1‑91 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa         >  2:3228718/1‑91 (MQ=255)

                                                                                  aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa         >  1:3500495/1‑91 (MQ=255)

                                                                                   cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt        >  1:1831043/1‑91 (MQ=255)

                                                                                   cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt        <  1:3075819/91‑1 (MQ=255)

                                                                                   cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt        <  2:88973/91‑1 (MQ=255)

                                                                                   cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt        <  1:2679552/91‑1 (MQ=255)

                                                                                      gTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATaaa     <  2:721771/91‑1 (MQ=255)

                                                                                         ccACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAAt  <  1:1578241/91‑1 (MQ=255)

GGATTTTTACCGCACTTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAAT  >  USA300TCH1516_ALE/1759618‑1759797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.