| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1836947 | 134 (0.660) | 22 (0.130) | 12/132 | NT | 16.5% | intergenic (+31/+119) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase |
| ? | USA300TCH1516_ALE | = 1836967 | 112 (0.670) | intergenic (+51/+99) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase | |||||
Only 100 of 301 total aligned reads displayed.
CTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA > USA300TCH1516_ALE/1836857‑1837037 | gttgtttgacagcataacttgtagtgaaggattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaag > 2:2633441‑M1/78‑91 (MQ=255) ttAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAagaaga > 1:2297336/1‑91 (MQ=255) tAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGAc < 1:2143075/91‑1 (MQ=255) aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAAGTCAAAATGCCAAGAAGACa < 2:251371/91‑1 (MQ=255) aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt > 2:3296118/1‑91 (MQ=255) aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt > 1:1928179/1‑91 (MQ=255) aCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAtt > 1:1768277/1‑91 (MQ=255) gTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAt < 1:1842133/91‑1 (MQ=255) tGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTa < 1:273635/91‑1 (MQ=255) ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc > 1:1363135/1‑91 (MQ=255) gAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTc > 1:3751767/1‑91 (MQ=255) aaTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACGTcc < 2:3505446/91‑1 (MQ=255) tggtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAt > 2:3083365‑M1/60‑91 (MQ=255) tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt > 1:3900007/1‑91 (MQ=255) tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt < 1:29613/91‑1 (MQ=255) tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt < 1:29349/91‑1 (MQ=255) tgtagtgagtgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt > 1:2628752‑M1/59‑91 (MQ=255) tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt > 2:1864940‑M1/59‑91 (MQ=255) aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCACAATGCCAAGAAGACATTGGATTACTTCCAtt > 2:1484802/1‑91 (MQ=255) aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatg < 1:1653658‑M1/91‑20 (MQ=255) aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGacaatggaagtaatccaat < 2:3458084‑M1/91‑20 (MQ=255) aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAtt < 2:1364325/91‑1 (MQ=255) cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgt < 2:530208‑M1/91‑21 (MQ=255) cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg < 1:2997315/91‑1 (MQ=255) aaTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtc < 1:1147097‑M1/91‑22 (MQ=255) agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct > 1:423606‑M1/56‑91 (MQ=255) gtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGctt > 1:47708‑M1/55‑91 (MQ=255) cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc < 2:326769‑M2/91‑5 (MQ=255) aaTTTTCACGACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt > 2:1183048‑M2/1‑85 (MQ=255) aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg > 1:3250435‑M2/1‑84 (MQ=255) aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg < 2:1790013‑M2/91‑8 (MQ=255) ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg > 1:1251884‑M2/1‑83 (MQ=255) ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca > 1:2799036‑M2/1‑81 (MQ=255) ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca < 2:2161816‑M2/91‑11 (MQ=255) tCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcat < 2:1657115‑M2/91‑12 (MQ=255) cacaACTGAATTGACGGTACAGTCATAAACAATTTCTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTTCATTGattcttggcatt < 2:1062023‑M2/91‑13 (MQ=255) cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt < 2:2107280‑M2/91‑13 (MQ=255) cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt < 2:1571901‑M2/91‑13 (MQ=255) acaACTGAATTGACCGTACAGTCATAATCAATGTATATAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattt > 2:2401509‑M2/1‑78 (MQ=255) caACTGAATTGACGGTACAGTCATAACCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt > 2:334888‑M2/1‑77 (MQ=255) aaCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt > 1:3861893/1‑91 (MQ=255) aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt < 2:1152326/91‑1 (MQ=255) cTGAATTGACGGTACAGTCATAAACACTTTATGGAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc < 1:1468284/91‑1 (MQ=255) cTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc < 2:3743395/91‑1 (MQ=255) tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa > 2:2068063/1‑91 (MQ=255) aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta < 1:349994/91‑1 (MQ=255) tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCATGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt < 2:767686/91‑1 (MQ=255) gACGGTACAGTCATAAACACTTTATGTAAATTCACAATGCCAAGAAGACATTGGCTTACTTCCATCGCTTCTTGGCATTTTTTCAttatta > 2:1901597/1‑91 (MQ=255) gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta > 1:1274001/1‑91 (MQ=255) gACAGTACAGTCATAAACAATTTATGTAAATTCAATATGCCAAGAAGACCTCGGATCACCTCCATTGCTTCTCGGCATTTTTTCAttatta > 2:2212863/1‑91 (MQ=255) aCGTTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTATTTCCATTGCTTCTTGGCATTTTTTCATTATTaa < 2:1737497/91‑1 (MQ=255) aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCTAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa < 2:897297/91‑1 (MQ=255) aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa < 2:464861/91‑1 (MQ=255) cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt > 1:1867328/1‑91 (MQ=255) cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt > 2:2884791/1‑91 (MQ=255) cAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAt > 1:2429206/1‑91 (MQ=255) gacATAAACAATGTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTg < 2:1252963/89‑1 (MQ=255) gTCACAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTATTGGCATTTTTTCATTATTAATTTCATTg > 1:1811532/1‑91 (MQ=255) tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt < 2:3415952/91‑1 (MQ=255) tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt > 1:110486/1‑91 (MQ=255) tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt < 1:3611538/91‑1 (MQ=255) cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttat < 1:1991904‑M1/91‑56 (MQ=255) aTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatg < 1:1991519‑M2/91‑37 (MQ=255) aTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatg < 1:1992370‑M2/91‑37 (MQ=255) aCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCa > 1:2175164/1‑91 (MQ=255) cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa > 1:470471/1‑91 (MQ=255) cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa > 1:2885595/1‑91 (MQ=255) aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat > 1:3607762/1‑91 (MQ=255) aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat > 1:826707/1‑91 (MQ=255) aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat > 1:918865/1‑91 (MQ=255) aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata < 1:619855/91‑1 (MQ=255) aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata < 2:2297336/91‑1 (MQ=255) tttATGTAAATTCAAAATGCCAGGAAGGCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat < 2:3189619/91‑1 (MQ=255) tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat > 1:3427612/1‑91 (MQ=255) ttATGTAAATTGAAAATGCCAAGAAGACATTGGATTACTTCCCTTGCTTCTTGGCATGATTTCATTATTAATTCCATTGTAACTCAATATg > 2:2715029/1‑91 (MQ=255) tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa < 2:3794504/91‑1 (MQ=255) gtgaaTTCAGAATGCCAAGAAGACATTGGATTACTTCCAGTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc < 2:3247969/88‑1 (MQ=255) gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc > 2:2838415/1‑91 (MQ=255) gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc < 2:1549882/91‑1 (MQ=255) aaaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCt > 1:23403/1‑91 (MQ=255) aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt < 2:150715/91‑1 (MQ=255) tCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTgg < 2:1457689/91‑1 (MQ=255) cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt < 1:2689149/91‑1 (MQ=255) aAAACTGCCAAGAAGACATTGGATTACTTCCATTTCTTCTTTGCATTTTTTCATTATTAATTTAATTGTAACTCAATATGAAACCTTTGGt > 2:3757052‑M1/2‑91 (MQ=255) aaaaTGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttg > 1:1991085‑M1/1‑14 (MQ=255) AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGtt < 2:2410079‑M1/91‑1 (MQ=255) AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc < 1:3802590‑M1/91‑1 (MQ=255) aaTGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtg < 2:2107166‑M1/91‑80 (MQ=255) AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa > 1:719236‑M1/1‑91 (MQ=255) tGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaa > 2:194319‑M1/1‑10 (MQ=255) tGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaa > 2:3941815‑M1/1‑10 (MQ=255) gCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaa < 2:2114729‑M2/91‑63 (MQ=255) CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa > 1:2607106‑M1/1‑91 (MQ=255) cAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaat > 1:3743010‑M1/1‑7 (MQ=255) cAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaat > 1:3250224‑M1/1‑7 (MQ=255) gaagaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttg < 1:794089‑M2/91‑68 (MQ=255) AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc < 2:2969808‑M1/91‑1 (MQ=255) agcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgat < 1:3316988‑M1/91‑90 (MQ=255) agcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgat < 1:1058979‑M1/91‑90 (MQ=255) agaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgat < 2:1017809‑M2/91‑70 (MQ=255) | CTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA > USA300TCH1516_ALE/1836857‑1837037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |