New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1836947134 (0.660)22 (0.130) 12/132 NT 16.5% intergenic (+31/+119) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE = 1836967 112 (0.670)intergenic (+51/+99) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 226 total aligned reads displayed.

CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057
                                                                                          |                                                                                          
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:578374‑M1/58‑91 (MQ=255)
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  2:1158351‑M1/58‑91 (MQ=255)
gtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            >  1:1917830‑M1/58‑91 (MQ=255)
cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                                                            <  1:2997346/91‑1 (MQ=255)
 tagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGc                                                                                           >  2:2367058‑M1/57‑91 (MQ=255)
  aTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                                                          <  2:2099444‑M2/91‑3 (MQ=255)
  aTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                                                          <  1:3316988‑M2/91‑3 (MQ=255)
  aTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                                                          <  1:1058979‑M2/91‑3 (MQ=255)
   gtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGctt                                                                                         >  1:47708‑M1/55‑91 (MQ=255)
    cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc                                                                                        <  2:326769‑M2/91‑5 (MQ=255)
     aaaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttct                                                                                       >  2:2848448‑M2/1‑86 (MQ=255)
      aaTTTTCACGACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                                                      >  2:1183048‑M2/1‑85 (MQ=255)
       aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                                                     >  1:3250435‑M2/1‑84 (MQ=255)
        ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                                                    >  1:1251884‑M2/1‑83 (MQ=255)
         gattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGc                                                                                   >  2:376310‑M1/49‑91 (MQ=255)
          ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                                                  >  1:2160880‑M2/1‑81 (MQ=255)
          ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                                                  >  2:194319‑M2/1‑81 (MQ=255)
          ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                                                  >  1:2799036‑M2/1‑81 (MQ=255)
          ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                                                  <  2:2161816‑M2/91‑11 (MQ=255)
            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  1:417911‑M2/91‑13 (MQ=255)
            cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                                                                <  2:2107280‑M2/91‑13 (MQ=255)
              caACTGAATTGACGGTACAGTCATAACCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                                                              >  2:334888‑M2/1‑77 (MQ=255)
              caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                                                              >  1:1991085‑M2/1‑77 (MQ=255)
               aaCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                                                             >  1:3861893/1‑91 (MQ=255)
                aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTACTTGGCAtttttt                                                                            >  1:1811358/1‑91 (MQ=255)
                      ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                      <  1:815985/91‑1 (MQ=255)
                       tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                     <  1:2654253/91‑1 (MQ=255)
                        gACGGTACAGTCATAAACACTTTATGTAAATTCACAATGCCAAGAAGACATTGGCTTACTTCCATCGCTTCTTGGCATTTTTTCAttatta                                                                    >  2:1901597/1‑91 (MQ=255)
                        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTCCTTCCATTGCTTCTTGGCATTCTTTCAttatta                                                                    >  2:93076/1‑91 (MQ=255)
                        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    >  2:3092076/1‑91 (MQ=255)
                        gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                    >  2:3957762/1‑91 (MQ=255)
                        gACAGTACAGTCATAAACAATTTATGTAAATTCAATATGCCAAGAAGACCTCGGATCACCTCCATTGCTTCTCGGCATTTTTTCAttatta                                                                    >  2:2212863/1‑91 (MQ=255)
                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  2:168412/91‑1 (MQ=255)
                         aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                   <  2:897123/91‑1 (MQ=255)
                             tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                                                               >  2:1385685/1‑91 (MQ=255)
                               cAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAt                                                             >  1:2429206/1‑91 (MQ=255)
                                aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                            >  1:2219268/1‑91 (MQ=255)
                                aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                            >  1:2318302/1‑91 (MQ=255)
                                 gacATAAACAATGTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTg                                                           <  2:1252963/89‑1 (MQ=255)
                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCTTTATTTATTTCAttt                                                           >  2:501244/1‑90 (MQ=255)
                                 gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                           >  2:2512170/1‑91 (MQ=255)
                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                          >  1:110486/1‑91 (MQ=255)
                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                          <  1:3611538/91‑1 (MQ=255)
                                  tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                          <  2:3415952/91‑1 (MQ=255)
                                    aTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatg                                                        <  1:1991904‑M2/91‑37 (MQ=255)
                                      aaaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACt                                                      >  2:3592901/1‑91 (MQ=255)
                                       aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                     <  1:1399366/91‑1 (MQ=255)
                                         cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                                                   >  1:470471/1‑91 (MQ=255)
                                          aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                                                  >  1:826707/1‑91 (MQ=255)
                                           aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                 >  1:912435/1‑91 (MQ=255)
                                            tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                >  1:3427612/1‑91 (MQ=255)
                                             ttATGTAAATTGAAAATGCCAAGAAGACATTGGATTACTTCCCTTGCTTCTTGGCATGATTTCATTATTAATTCCATTGTAACTCAATATg                                               >  2:2715029/1‑91 (MQ=255)
                                             ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                               <  1:3868708/91‑1 (MQ=255)
                                             ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                               <  1:147487/91‑1 (MQ=255)
                                              tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                              <  2:3794504/91‑1 (MQ=255)
                                                 gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc                                           <  2:1549882/91‑1 (MQ=255)
                                                 gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc                                           >  1:3573557/1‑91 (MQ=255)
                                                    aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                        <  2:2789624/91‑1 (MQ=255)
                                                    aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                        <  2:3220684/91‑1 (MQ=255)
                                                    aaTGCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                        >  2:3501763/1‑91 (MQ=255)
                                                     aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt                                       <  2:150715/91‑1 (MQ=255)
                                                       tCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTgg                                     <  2:1457734/91‑1 (MQ=255)
                                                        cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    <  2:189350/91‑1 (MQ=255)
                                                        aAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                    >  1:2723588‑M1/2‑91 (MQ=255)
                                                         AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTACCTCAATATGATACCTTTGGtt                                   <  2:2409950‑M1/91‑1 (MQ=255)
                                                         AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGtt                                   <  2:2410079‑M1/91‑1 (MQ=255)
                                                          AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAGTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                  >  2:2208524‑M1/1‑91 (MQ=255)
                                                           AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                 <  2:1119283‑M1/91‑1 (MQ=255)
                                                           AATGCCAAGAAGACATTGGAATACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                 <  1:1704995‑M1/91‑1 (MQ=255)
                                                            ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTGACTCAATATGAAACCTTTGGTTCaa                                <  1:3670004‑M1/91‑1 (MQ=255)
                                                               CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                             >  1:2607106‑M1/1‑91 (MQ=255)
                                                                CAAGAAGAAATGGGATTAGTTGCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                            >  2:3752317‑M1/1‑91 (MQ=255)
                                                                 aagaagACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagtcgtgaaaatt                           <  1:3784867‑M2/91‑66 (MQ=255)
                                                                  agaagaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaattt                          <  1:1843944‑M2/91‑67 (MQ=255)
                                                                   GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa                         >  2:799247‑M1/1‑91 (MQ=255)
                                                                    AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc                        <  2:2969808‑M1/91‑1 (MQ=255)
                                                                     agaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgat                       <  2:1017809‑M2/91‑70 (MQ=255)
                                                                     AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                       >  1:2964111‑M1/1‑91 (MQ=255)
                                                                      gaCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgatt                      <  1:1147097‑M2/91‑71 (MQ=255)
                                                                       aCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattg                     <  1:708973‑M2/91‑72 (MQ=255)
                                                                       aCATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattg                     <  2:530208‑M2/91‑72 (MQ=255)
                                                                        cATTGGATTACTTCCATTGctcctcggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaactttgattgc                    <  2:1750617‑M2/91‑73 (MQ=255)
                                                                        cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                    >  2:3389092/1‑91 (MQ=255)
                                                                         aTTGGATTACTTCCATTGtcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattgt                   <  2:3458084‑M2/91‑74 (MQ=255)
                                                                          ttGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatgactgtaccgtcaattcagttgtgaaaatttgattgtat                  <  2:1635813‑M2/91‑75 (MQ=255)
                                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                  <  1:3610562/91‑1 (MQ=255)
                                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                  >  1:2700217/1‑91 (MQ=255)
                                                                          ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATAATTAATTTGATTGTAACCCAATATGAAACCTTTGGTTCAATCATTCACTAccac                  >  2:145693/1‑88 (MQ=255)
                                                                              aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt              <  1:2031876/91‑1 (MQ=255)
                                                                               ttACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATg             <  2:3864413/91‑1 (MQ=255)
                                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt           >  2:229372/1‑91 (MQ=255)
                                                                                 aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt           <  2:444872/91‑1 (MQ=255)
                                                                                  cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg          >  2:3028499/1‑91 (MQ=255)
                                                                                   ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt         <  2:3730632/91‑1 (MQ=255)
                                                                                    tCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTc        >  2:2025416/1‑91 (MQ=255)
                                                                                        ttGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaac    >  1:3432750/1‑91 (MQ=255)
                                                                                         tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca   >  1:166844/1‑91 (MQ=255)
                                                                                          gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa  <  2:1801162/91‑1 (MQ=255)
                                                                                          gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa  <  1:29169/91‑1 (MQ=255)
                                                                                          gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa  >  1:2353119/1‑91 (MQ=255)
                                                                                          |                                                                                          
CAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAA  >  USA300TCH1516_ALE/1836877‑1837057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.