| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1838254 = | 172 (0.840) | 21 (0.120) | 10/140 | NT | 12.4% | intergenic (‑58/+49) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 1838290 = | 147 (0.830) | intergenic (‑94/+13) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
Only 100 of 313 total aligned reads displayed.
AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTG > USA300TCH1516_ALE/1838164‑1838344 | atggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagcta < 2:1314698‑M1/1‑1 (MQ=255)aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA < 1:3795274‑M1/91‑1 (MQ=255)aaCGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACCCCACTTCTGAAAATTCAGCTATAAATCATTCTACTATTTGACTAAAAA > 2:105799‑M1/1‑91 (MQ=255) tggcaaacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctaa < 2:2357686‑M1/2‑1 (MQ=255) cGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 2:1800327‑M1/1‑91 (MQ=255) ccATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:3427998‑M1/1‑91 (MQ=255) catcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:1127592‑M1/1‑91 (MQ=255) atcaacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC > 2:2995934‑M1/1‑91 (MQ=255) aacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcgc < 1:863707‑M1/7‑1 (MQ=255) aacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcgc < 1:2553783‑M1/7‑1 (MQ=255) aacattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcgc < 1:1516926‑M1/7‑1 (MQ=255) aacattcaactcaagttatcgtcggtacatacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAgcgc < 2:3449296‑M1/7‑1 (MQ=255) cattcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCaa > 2:476841‑M1/83‑91 (MQ=255) caacatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA < 1:2372377‑M1/91‑1 (MQ=255) acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc < 1:196337/91‑1 (MQ=255) acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc < 2:1458489/91‑1 (MQ=255) acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc < 2:2374754/91‑1 (MQ=255) catcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAcc > 2:2904903/1‑91 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa < 2:3692753/91‑1 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa < 2:2612733/91‑1 (MQ=255) aaaTAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTAt > 1:2151286/1‑91 (MQ=255) aaTAAAATTTTCTTCACAACCCCCCCTCCATTTCTGCAAATTCAGATATAAATCCTTCAACTATCTGACTAAATAAAGCGCAAACTGTAtt > 2:2900970/1‑91 (MQ=255) aTAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTg < 2:2855396/91‑1 (MQ=255) tAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGa > 1:3355716/1‑91 (MQ=255) aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGaa > 2:2162005/1‑91 (MQ=255) aaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGt < 2:808370/91‑1 (MQ=255) aaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGt < 1:2693970/91‑1 (MQ=255) tattggcggaacacacgtacagcaggttgctgatgaaattgaaaaacatttatgaaatttaaacagctAAAGCGCAAACCCTATTGAAGtt > 1:3344424‑M1/69‑91 (MQ=255) aTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGtt < 1:1411371/91‑1 (MQ=255) attgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTa > 1:1641706‑M1/68‑91 (MQ=255) tttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagg < 2:551998‑M1/91‑16 (MQ=255) ttgtcggtacacacgtacagcatgttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAg > 2:3185556‑M1/67‑91 (MQ=255) ttgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAg > 1:297826‑M1/67‑91 (MQ=255) ttgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAg > 1:1920839‑M1/67‑91 (MQ=255) ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaataggg < 1:791529‑M1/91‑17 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggt < 1:1301937‑M1/91‑18 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:921838‑M2/1‑90 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:2273561‑M2/1‑90 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:3094099‑M2/1‑90 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:3713592‑M2/1‑89 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:1610172‑M2/1‑89 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt < 1:1845358‑M2/91‑3 (MQ=255) cggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAGAttt > 2:101376‑M1/63‑91 (MQ=255) gtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAGATTTgc > 2:1401730‑M1/61‑91 (MQ=255) gtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAGATTTgc > 2:620331‑M1/61‑91 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgc < 1:3920496‑M1/91‑22 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgc < 1:3894665‑M1/91‑22 (MQ=255) aaTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgcgct < 2:3943822‑M1/91‑25 (MQ=255) aaTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgct > 2:3241241‑M2/1‑83 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCATACCCTATTGAAGTTAGAtttgcgctt > 2:2237669‑M2/1‑82 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgcgctt < 2:1079315‑M1/91‑26 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgcgctt < 2:2210285‑M1/91‑26 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgctt < 1:2608318‑M2/91‑10 (MQ=255) cccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAg < 1:3471446/91‑1 (MQ=255) cccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAg > 2:3871701/1‑91 (MQ=255) ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGc > 2:3138976/1‑91 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGGTTTAGCt > 1:1958004/1‑91 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCt < 2:2673493/91‑1 (MQ=255) cTCCATTTCGGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGt < 1:3784076/91‑1 (MQ=255) tCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGtt < 1:2895638/91‑1 (MQ=255) gcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt > 1:146538‑M1/48‑91 (MQ=255) ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt < 2:1978291/91‑1 (MQ=255) tttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTaaa > 2:3957117/1‑91 (MQ=255) tGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAtttt > 1:434396/1‑91 (MQ=255) gAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta < 2:2443155/91‑1 (MQ=255) aaaaTTCAGATATAAATCATTCTACTATTCGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtat < 1:3171674/91‑1 (MQ=255) aTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaaa < 1:3534353/91‑1 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt > 1:475732/1‑91 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt > 1:3578695/1‑91 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 1:2494177/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 1:695395/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 2:686352/91‑1 (MQ=255) ataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTc > 2:3561509/1‑91 (MQ=255) ataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTc < 2:2620493/91‑1 (MQ=255) taAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCa > 1:869501/1‑91 (MQ=255) taAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTCAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCa > 1:1080195/1‑91 (MQ=255) aaTCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTCATAAATGTTTTTCAAt > 2:3787406/1‑91 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 2:839996/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 2:1200291/91‑1 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 2:89137/1‑91 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:107248/1‑91 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:2215541/1‑91 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:66548/1‑91 (MQ=255) actaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGc < 1:3615122/91‑1 (MQ=255) actaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGc < 1:813321/91‑1 (MQ=255) actaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGc > 2:1665389/1‑91 (MQ=255) ctaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCa > 1:278316/1‑91 (MQ=255) ctaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCa > 2:1238826/1‑91 (MQ=255) ctaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCa < 1:1772224/91‑1 (MQ=255) ttGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACct > 1:2038174/1‑91 (MQ=255) gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc > 1:3615828/1‑91 (MQ=255) cTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgctg < 2:2325843/91‑1 (MQ=255) cTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgctg > 1:2514278/1‑91 (MQ=255) tAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGt > 1:3852453/1‑91 (MQ=255) aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa < 2:3349450/91‑1 (MQ=255) aaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt < 1:3036519/91‑1 (MQ=255) aaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgt < 2:217326/91‑1 (MQ=255) aaaGCGCAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtgggga > 1:586245‑M1/1‑10 (MQ=255) aaaGCGCAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtgggga < 1:1110703‑M2/91‑66 (MQ=255) AAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtg > 2:1922014‑M1/1‑91 (MQ=255) | AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTG > USA300TCH1516_ALE/1838164‑1838344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |