New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1841984 =128 (0.630)22 (0.130) 6/134 NT 17.9% intergenic (+24/+70) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
?USA300TCH1516_ALE 1842029 = 95 (0.560)intergenic (+69/+25) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 288 total aligned reads displayed.

ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAA  >  USA300TCH1516_ALE/1841894‑1842074
                                                                                          |                                                                                          
aCCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA                                                                                            >  1:322721‑M1/1‑91 (MQ=255)
aCCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA                                                                                            >  2:1258563‑M1/1‑91 (MQ=255)
 tgatggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattag                                                                                           <  2:3391720‑M1/2‑1 (MQ=255)
 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG                                                                                           <  1:2407603‑M1/91‑1 (MQ=255)
 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG                                                                                           <  2:18818‑M1/91‑1 (MQ=255)
 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG                                                                                           >  1:85237‑M1/1‑91 (MQ=255)
  gatggcgaatttacgattattcgtagcgataagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattaga                                                                                          >  2:1810193‑M1/89‑91 (MQ=255)
   atggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattagag                                                                                         <  1:593645‑M1/4‑1 (MQ=255)
   atggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattagag                                                                                         >  2:35303‑M1/88‑91 (MQ=255)
   aaaaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG                                                                                         <  1:1109382‑M1/91‑1 (MQ=255)
   aaaaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG                                                                                         >  1:2150186‑M1/1‑91 (MQ=255)
    aaaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC                                                                                        <  2:2600979‑M1/91‑1 (MQ=255)
     ggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGcc                                                                                       <  1:1520215‑M1/6‑1 (MQ=255)
      aCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCT                                                                                      <  1:2169113‑M1/91‑1 (MQ=255)
       cGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGTCAGAAAAGTACATTAAGAGCCTA                                                                                     >  2:3013188‑M1/1‑91 (MQ=255)
        gaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTAc                                                                                    >  1:1692786‑M1/83‑91 (MQ=255)
        gaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTAc                                                                                    >  1:160340‑M1/83‑91 (MQ=255)
        gaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTAc                                                                                    >  1:93830‑M1/83‑91 (MQ=255)
         tCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT                                                                                   <  2:1030372‑M1/91‑1 (MQ=255)
         aatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACt                                                                                   <  1:466674‑M1/10‑1 (MQ=255)
         aatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACt                                                                                   >  2:2840341‑M1/82‑91 (MQ=255)
         aatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACt                                                                                   >  1:3704007‑M1/82‑91 (MQ=255)
          cAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC                                                                                  >  1:3823004‑M1/1‑91 (MQ=255)
          cAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC                                                                                  >  2:3270347‑M1/1‑91 (MQ=255)
          atttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTc                                                                                  >  1:537756‑M1/81‑91 (MQ=255)
          atttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTc                                                                                  >  2:294671‑M1/81‑91 (MQ=255)
           tttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCa                                                                                 <  1:2825953‑M1/12‑1 (MQ=255)
           aaaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA                                                                                 >  1:2988777‑M1/1‑91 (MQ=255)
            cagCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT                                                                                <  2:3934748‑M1/90‑1 (MQ=255)
            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGAAAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATGAAGAGCCTACTCAT                                                                                <  2:262579‑M1/91‑1 (MQ=255)
             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt                                                                               <  1:319146/91‑1 (MQ=255)
              gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTa                                                                              <  2:3847635/91‑1 (MQ=255)
                 gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAt                                                                           >  1:1268239/1‑91 (MQ=255)
                  aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt                                                                          <  1:914572/91‑1 (MQ=255)
                    cAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCt                                                                        <  2:1519152/91‑1 (MQ=255)
                     aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCtt                                                                       <  1:1338824/91‑1 (MQ=255)
                     aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCtt                                                                       >  2:3213615/1‑91 (MQ=255)
                      gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa                                                                      >  2:2345392/1‑91 (MQ=255)
                       aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATAAAGAGCCTACTCATTACATTCTTAg                                                                     <  2:101502/91‑1 (MQ=255)
                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaa                                                                    <  1:2010954‑M1/91‑13 (MQ=255)
                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAgg                                                                    <  1:1646004/91‑1 (MQ=255)
                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAgg                                                                    >  1:777099/1‑91 (MQ=255)
                          gTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaa                                                                  <  2:1646484/91‑1 (MQ=255)
                            cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg                                                                <  1:2626484/91‑1 (MQ=255)
                              aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgt                                                              <  2:2749524‑M1/91‑19 (MQ=255)
                               tctcctggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACAATAAGAGCCTACTCATattcatacctaagaatgta                                                             <  1:3051248‑M1/88‑20 (MQ=255)
                               taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                             >  1:2351874‑M1/60‑91 (MQ=255)
                               taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                             >  1:350654‑M1/60‑91 (MQ=255)
                               taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                             >  1:2924404‑M1/60‑91 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  1:66579‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:2066322‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:1118827‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:3768329‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:3613472‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:3236024‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                             <  2:3105596‑M1/91‑20 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                             >  2:526970/1‑91 (MQ=255)
                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                             <  1:1310263/91‑1 (MQ=255)
                                gacCTGGCCGAGGCGATAGAGAGTGCTTGAGATAATTGACAGACAGAAAAGTACATTAAGAGCCTACTCGTatgcattcctaggaatgtaa                                                            <  2:239753‑M1/90‑21 (MQ=255)
                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATGATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaa                                                            <  2:995808‑M1/91‑21 (MQ=255)
                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATa                                                            <  1:894453‑M2/91‑2 (MQ=255)
                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATa                                                            <  2:795835‑M2/91‑2 (MQ=255)
                                aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                            >  2:1548723‑M1/59‑91 (MQ=255)
                                aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                            >  1:2492812‑M1/59‑91 (MQ=255)
                                aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                            >  1:3933105‑M1/59‑91 (MQ=255)
                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                           <  1:1815134‑M1/91‑22 (MQ=255)
                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat                                                           >  1:2745720‑M2/1‑89 (MQ=255)
                                  gaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAATATg                                                          >  1:379249‑M1/57‑91 (MQ=255)
                                  ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                          <  1:19360‑M1/91‑23 (MQ=255)
                                     ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                       >  1:396696‑M2/1‑85 (MQ=255)
                                        cAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTCAGGAATGAATatgagtagg                                                    <  2:2261104‑M2/91‑10 (MQ=255)
                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                 <  1:1074816‑M2/91‑13 (MQ=255)
                                            gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctct                                                <  1:2690111‑M2/91‑14 (MQ=255)
                                               aTAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAat                                             >  2:1675507/1‑91 (MQ=255)
                                                tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                            >  1:1852912/1‑91 (MQ=255)
                                                 agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                           >  2:3830768/1‑91 (MQ=255)
                                                 agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                           >  1:725288/1‑91 (MQ=255)
                                                  gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                          <  1:331981/91‑1 (MQ=255)
                                                    gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                        <  1:149239/91‑1 (MQ=255)
                                                        tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                    <  2:2784156/91‑1 (MQ=255)
                                                         cTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCt                                   >  2:737788/1‑91 (MQ=255)
                                                          tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                  <  2:184829/91‑1 (MQ=255)
                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                >  2:2578953/1‑91 (MQ=255)
                                                                tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                            >  1:358265/1‑91 (MQ=255)
                                                                tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                            <  2:2644232/91‑1 (MQ=255)
                                                                tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                            >  1:1246475/1‑91 (MQ=255)
                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                           <  1:376020/91‑1 (MQ=255)
                                                                   tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                         <  2:140823/91‑1 (MQ=255)
                                                                     tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                       <  1:1037310/91‑1 (MQ=255)
                                                                       cagacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattt                     >  1:3311915/1‑91 (MQ=255)
                                                                               aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg             >  2:2050785/1‑91 (MQ=255)
                                                                                aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt            >  1:190804/1‑91 (MQ=255)
                                                                                 aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt           <  2:3414786/91‑1 (MQ=255)
                                                                                 aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt           >  2:902592/1‑91 (MQ=255)
                                                                                 aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt           >  2:2868427/1‑91 (MQ=255)
                                                                                    aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc        >  2:2137908/1‑91 (MQ=255)
                                                                                    aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc        >  1:1365304/1‑91 (MQ=255)
                                                                                     cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc       >  2:1946189/1‑91 (MQ=255)
                                                                                      aTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCa      >  1:2317303/1‑91 (MQ=255)
                                                                                       ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt     >  2:62185/1‑91 (MQ=255)
                                                                                          |                                                                                          
ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAA  >  USA300TCH1516_ALE/1841894‑1842074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.