BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1841984 =	128 (0.630)	22 (0.130)	6/134	NT	17.9%	intergenic (+24/+70)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1842029 =	95 (0.560)	22 (0.130)	6/134	NT	17.9%	intergenic (+69/+25)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 225 total aligned reads displayed.

GATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAT  >  USA300TCH1516_ALE/1841940‑1842119

  tAGAGATTTCTTTAGATAATTTACAGACCGAAAAGGACATTAAGGGCCTACCCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                                                                         <  2:1139944/91‑1 (MQ=255)

  tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                                                                         >  2:1693545/1‑91 (MQ=255)

  tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                                                                         >  1:1852912/1‑91 (MQ=255)

   agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                                        >  1:586672/1‑91 (MQ=255)

   agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                                        >  1:609796/1‑91 (MQ=255)

   agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                                        >  1:725288/1‑91 (MQ=255)

    gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                                       <  1:331504/91‑1 (MQ=255)

     agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                                                      <  2:3842944/91‑1 (MQ=255)

      gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                                     <  1:149239/91‑1 (MQ=255)

         ttCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAg                                                                                  >  1:761684/1‑91 (MQ=255)

          tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                                                 <  2:2784156/91‑1 (MQ=255)

           cTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCt                                                                                <  1:1529125/91‑1 (MQ=255)

            tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                                                               >  2:1581905/1‑91 (MQ=255)

              tAGATAATTTACAGACAGAAAAGTACTTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                                             <  2:409752/91‑1 (MQ=255)

                  tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                                                         <  2:1941206/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:853418/91‑1 (MQ=255)

                   aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                                        <  1:376020/91‑1 (MQ=255)

                     tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                                                      <  2:140823/91‑1 (MQ=255)

                      ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                                     <  1:1811171/91‑1 (MQ=255)

                      ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                                     <  1:1518931/91‑1 (MQ=255)

                       tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                                    <  1:1920903/91‑1 (MQ=255)

                       tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                                    <  1:1037310/91‑1 (MQ=255)

                          agacagaAAAGTACATTAAGAGCCTACTCATTTCATGCTTAGGAATGAATATGAGTAGGCTCTAATTTTTTTAGCTAGGCAATTAtattta                                                                 >  2:2219725/1‑91 (MQ=255)

                           gacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                                                                <  1:3788443/91‑1 (MQ=255)

                                  aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                                         >  1:190804/1‑91 (MQ=255)

                                  aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                                         <  1:1834995/91‑1 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        <  2:3414786/91‑1 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  1:3821062/1‑91 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  2:2868427/1‑91 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  1:3735403/1‑91 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  1:1600148/1‑91 (MQ=255)

                                   aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                                        >  2:902592/1‑91 (MQ=255)

                                     tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                                      >  1:1249654/1‑91 (MQ=255)

                                     tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGCCTCTAATTTATTTAGCTATGCAATTATATGTATTGATAGTTaa                                                      >  1:3960405/1‑91 (MQ=255)

                                      aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc                                                     >  1:1365304/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:1051656/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:3223040/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  1:1292815/1‑91 (MQ=255)

                                       cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                                    >  2:1946189/1‑91 (MQ=255)

                                        aTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCa                                                   >  1:2317303/1‑91 (MQ=255)

                                         ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                                  >  2:62185/1‑91 (MQ=255)

                                          tAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATg                                                 <  1:260395/91‑1 (MQ=255)

                                           aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa                                                <  1:2356213/91‑1 (MQ=255)

                                            AGAGTCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGaa                                               >  1:3294805‑M1/1‑91 (MQ=255)

                                             GAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                              <  2:3268679‑M1/91‑1 (MQ=255)

                                              AGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             <  2:2079395‑M1/91‑1 (MQ=255)

                                              AGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             <  1:2346733‑M1/91‑1 (MQ=255)

                                              AGCCTACTCATTACATGCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                                             >  2:3034654‑M1/1‑91 (MQ=255)

                                                 CTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATCTATTGATAGTTAACCATGAAGTAtt                                          <  2:3092185‑M1/91‑1 (MQ=255)

                                                  tactcatattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAACTATATTTATTGATAGTTAACCATGAAGTAttt                                         >  1:3376083‑M2/40‑91 (MQ=255)

                                                  TACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttt                                         <  2:548114‑M1/91‑1 (MQ=255)

                                                    CTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttt                                       >  1:1745603‑M1/1‑91 (MQ=255)

                                                    CTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttttt                                       >  2:2803982‑M1/1‑91 (MQ=255)

                                                     TCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                                      >  1:3872144‑M1/1‑91 (MQ=255)

                                                     TCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTCATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                                      <  2:3251756‑M1/91‑1 (MQ=255)

                                                      catattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                                     >  1:999500‑M2/36‑91 (MQ=255)

                                                       ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                                    <  2:2585464‑M1/91‑1 (MQ=255)

                                                       ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                                    >  2:708269‑M1/1‑91 (MQ=255)

                                                        tattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt                                   >  2:1548702‑M2/34‑91 (MQ=255)

                                                        tattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt                                   >  2:1548810‑M2/34‑91 (MQ=255)

                                                        tattcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt                                   >  1:2492812‑M2/34‑91 (MQ=255)

                                                        TTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCtt                                   <  2:215445‑M1/91‑1 (MQ=255)

                                                         attcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  1:2351874‑M2/33‑91 (MQ=255)

                                                         attcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  2:1845313‑M2/33‑91 (MQ=255)

                                                         attcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTa                                  >  1:2924404‑M2/33‑91 (MQ=255)

                                                          ttcattcctaagaatgtaatgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAc                                 >  1:119869‑M2/32‑91 (MQ=255)

                                                          aCATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTAc                                 >  2:1091632/1‑91 (MQ=255)

                                                               cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga                            <  1:2200550/91‑1 (MQ=255)

                                                               cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga                            >  2:3743244/1‑91 (MQ=255)

                                                                 tAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacg                          >  2:3662440/1‑91 (MQ=255)

                                                                  aGGAATGAATATGAGTAGGCTCTAATTTATGTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga                         <  1:3630422/91‑1 (MQ=255)

                                                                    gaatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaat                       <  1:265485/91‑1 (MQ=255)

                                                                    gaatgaatATGAGTAGGCTCTAATTTATCTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaat                       >  2:2273457/1‑91 (MQ=255)

                                                                     aatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACTTCGACGaata                      >  2:2836045/1‑91 (MQ=255)

                                                                       tgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataat                    >  1:829653/1‑91 (MQ=255)

                                                                       tgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataat                    >  2:2542592/1‑91 (MQ=255)

                                                                        gaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATc                   <  2:2839563/91‑1 (MQ=255)

                                                                         aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg                  >  1:138920/1‑91 (MQ=255)

                                                                         aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg                  <  2:3819798/91‑1 (MQ=255)

                                                                          atatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt                 <  2:93768/91‑1 (MQ=255)

                                                                          atatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt                 <  1:30015/91‑1 (MQ=255)

                                                                             tgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTaaa              >  2:2651485‑M2/13‑91 (MQ=255)

                                                                             tgagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTaaa              <  1:2825953‑M2/79‑1 (MQ=255)

                                                                              gagtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAAt             >  1:69645‑M2/12‑91 (MQ=255)

                                                                               agtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAAtt            >  2:2414232‑M2/11‑91 (MQ=255)

                                                                               agtaggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAAtt            <  1:466674‑M2/81‑1 (MQ=255)

                                                                                  aggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGc         <  1:1630953‑M2/84‑1 (MQ=255)

                                                                                  aggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGc         >  1:2295576‑M2/8‑91 (MQ=255)

                                                                                  aggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGc         <  1:304316‑M2/84‑1 (MQ=255)

                                                                                   ggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGcc        <  2:3546405‑M2/85‑1 (MQ=255)

                                                                                   ggctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGcc        >  2:3073263‑M2/7‑91 (MQ=255)

                                                                                     ctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGTCGAATAATCGTAAATTCGCCAt      >  2:2856694‑M2/5‑91 (MQ=255)

                                                                                     ctctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCAt      >  2:2762779‑M2/5‑91 (MQ=255)

                                                                                      tctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATc     <  2:2954937‑M2/88‑1 (MQ=255)

                                                                                       ctAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATACGCCATCa    >  2:3514355‑M2/3‑91 (MQ=255)

                                                                                       ctAATTTAGTTAGCTATGCAATTATATTTATTGATAGTTAACCAGGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCa    <  2:3391691‑M2/89‑1 (MQ=255)

                                                                                         aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  >  2:2605302/1‑91 (MQ=255)

                                                                                         aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  >  1:2756614/1‑91 (MQ=255)

                                                                                         aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  <  1:526970/91‑1 (MQ=255)

                                                                                         aaTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAt  <  2:1307106/91‑1 (MQ=255)

GATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTAAATTCGCCATCAAT  >  USA300TCH1516_ALE/1841940‑1842119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.