New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1856910 =248 (1.220)23 (0.130) 11/144 NT 9.8% intergenic (‑595/+105) aroF/USA300HOU_RS09235 Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein
?USA300TCH1516_ALE 1856940 = 199 (1.090)intergenic (‑625/+75) aroF/USA300HOU_RS09235 Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein

Only 100 of 343 total aligned reads displayed.

CAATATCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAA  >  USA300TCH1516_ALE/1856820‑1857000
                                                                                          |                                                                                          
cAATATCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaa                                                                                            <  1:1068373/91‑1 (MQ=255)
acattcaatgactaagattactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaata                                                                                            >  1:1700720‑M1/91‑91 (MQ=255)
 aaTATCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaa                                                                                           >  2:1218160/1‑91 (MQ=255)
 aaTATCACTATTGTTATCGGACGATGTTTCAAACAACAGAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaa                                                                                           <  2:652098/91‑1 (MQ=255)
  atatCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaaa                                                                                          <  2:1714876/91‑1 (MQ=255)
  atatCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaaa                                                                                          >  1:2805209/1‑91 (MQ=255)
  atatCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaaa                                                                                          >  1:143992/1‑91 (MQ=255)
   tatCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCaaaaaa                                                                                         <  1:1541257/91‑1 (MQ=255)
    atCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAg                                                                                        <  2:2665908/91‑1 (MQ=255)
     tCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAgg                                                                                       <  1:2123126/91‑1 (MQ=255)
     tCACTATTGTTATCTAACGATGTTGCAAACAAAATAAATACATGAAATGATCGCATTGCCTTTCAAAATAATCTGATAATATAAAAAAAgg                                                                                       <  2:2353626/91‑1 (MQ=255)
       atgactaagattactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTa                                                                                     <  1:1454924‑M1/8‑1 (MQ=255)
       atgactaagattactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTa                                                                                     >  1:3528670‑M1/84‑91 (MQ=255)
       atgactaagattactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTa                                                                                     <  1:2925129‑M1/8‑1 (MQ=255)
       atgactaagattactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTa                                                                                     <  1:2305891‑M1/8‑1 (MQ=255)
       aCTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTa                                                                                     >  1:3629072/1‑91 (MQ=255)
           ttGTTATCTAACGATGTTTCAAACATCATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCa                                                                                 <  1:3687088/91‑1 (MQ=255)
           ttGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCa                                                                                 >  2:2008565/1‑91 (MQ=255)
           ttGTTAGCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTAATGATAAAAAAAAAGGTAAGCa                                                                                 <  2:1527210/91‑1 (MQ=255)
             gTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCAcc                                                                               <  2:499133/91‑1 (MQ=255)
              ttATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCt                                                                              <  2:2235073/91‑1 (MQ=255)
              ttATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCt                                                                              <  1:1241625/91‑1 (MQ=255)
               tATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTg                                                                             <  1:2494052/91‑1 (MQ=255)
                aTCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGa                                                                            >  1:3256785/1‑91 (MQ=255)
                aTCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGa                                                                            <  1:3195982/91‑1 (MQ=255)
                aTCTAACGATGTGTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGa                                                                            >  1:3025452/1‑91 (MQ=255)
                 ttactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGaa                                                                           >  1:2527513‑M1/74‑91 (MQ=255)
                 ttactaaaatcgttgaataatcaatcataacagtaagctatgtaatatatgtttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGaa                                                                           >  2:3252873‑M1/74‑91 (MQ=255)
                 tCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGaa                                                                           >  2:1960568/1‑91 (MQ=255)
                  tactaaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGAAt                                                                          >  1:3890585‑M1/73‑91 (MQ=255)
                  cTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAAt                                                                          <  1:2406310/91‑1 (MQ=255)
                    aaCGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGc                                                                        <  1:936624/91‑1 (MQ=255)
                     taaaatcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGAATGcc                                                                       >  2:1760801‑M1/70‑91 (MQ=255)
                     aCGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGcc                                                                       <  1:988967/91‑1 (MQ=255)
                      cGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCt                                                                      <  1:3352501/91‑1 (MQ=255)
                       gATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTa                                                                     >  1:1393965/1‑91 (MQ=255)
                        aTGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTAc                                                                    >  1:743473/1‑91 (MQ=255)
                         tGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTAcc                                                                   <  1:568888/91‑1 (MQ=255)
                         tGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTAcc                                                                   >  1:479760/1‑91 (MQ=255)
                         tGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTAcc                                                                   >  1:1280644/1‑91 (MQ=255)
                          tcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGAATGCCTACCt                                                                  >  2:1050111‑M1/65‑91 (MQ=255)
                          tcgttgaataatcaatcatagcagtaagctatgtaatatatttttaaaaattgaatttcaaaatAAAAGGTAAGCACCTGAATGCCTACCt                                                                  >  2:2488985‑M1/65‑91 (MQ=255)
                          gTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCt                                                                  <  2:2584627/91‑1 (MQ=255)
                          gTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCt                                                                  <  1:402324/91‑1 (MQ=255)
                           tttCAAACAACATAAATACATGAAATGATCGGATGGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCtt                                                                 <  2:2627130/91‑1 (MQ=255)
                            ttCAAGCAACATAAATACATAAAATGATCGCATTGCCTTTCAAAATAAACTGATGATAGCAAAAAAGGTAAGCACCTGAATGCCTACCttt                                                                <  2:3209029/91‑1 (MQ=255)
                            ttCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCttt                                                                <  2:3740831/91‑1 (MQ=255)
                            ttCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCttt                                                                <  1:787669/91‑1 (MQ=255)
                             tCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCtttt                                                               <  1:1618566/91‑1 (MQ=255)
                                aacaacATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTAtt                                                            <  1:2260063/91‑1 (MQ=255)
                                    acaTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGa                                                        >  2:2680907/1‑91 (MQ=255)
                                    acaTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGa                                                        <  2:2849025/91‑1 (MQ=255)
                                     caTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGaa                                                       <  1:2957419/91‑1 (MQ=255)
                                     caTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGaa                                                       >  2:70104/1‑91 (MQ=255)
                                     caTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGaa                                                       >  1:2736064/1‑91 (MQ=255)
                                       tAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAAt                                                     <  1:3826770/91‑1 (MQ=255)
                                       tAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAAt                                                     <  1:2851150/91‑1 (MQ=255)
                                        aaaTACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAAtt                                                    >  1:2643386/1‑91 (MQ=255)
                                            aCATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAAt                                                >  2:1868364/1‑91 (MQ=255)
                                               tGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAAtttt                                             >  2:2932494/1‑91 (MQ=255)
                                                 aaaTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTa                                           >  1:1715775/1‑91 (MQ=255)
                                                  aaTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTaa                                          <  1:1854422/91‑1 (MQ=255)
                                                       tCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAata                                     <  2:2691740/91‑1 (MQ=255)
                                                       tCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAata                                     >  1:3451114/1‑91 (MQ=255)
                                                        cGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatat                                    >  2:1735211/1‑91 (MQ=255)
                                                         gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                   >  1:2030478/1‑91 (MQ=255)
                                                         gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                   >  1:1021012/1‑91 (MQ=255)
                                                         gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                   >  1:547262/1‑91 (MQ=255)
                                                           aTTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATAtt                                 >  2:3492640/1‑91 (MQ=255)
                                                            ttGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTa                                <  1:878677/91‑1 (MQ=255)
                                                              gCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACa                              <  2:1657247/91‑1 (MQ=255)
                                                              gCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACa                              >  2:3364475/1‑91 (MQ=255)
                                                               ccTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACAt                             <  1:3896821/91‑1 (MQ=255)
                                                                cTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATa                            <  1:2218266/91‑1 (MQ=255)
                                                                  ttCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGc                          <  2:858660/91‑1 (MQ=255)
                                                                   tCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCCACCTTTTATTTTGAAATTAAACCCTTAAAAATACATAACATAGCt                         >  2:1831465/1‑91 (MQ=255)
                                                                    cAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCtt                        <  1:1542955/91‑1 (MQ=255)
                                                                        aTAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTg                    <  2:3041409/91‑1 (MQ=255)
                                                                         tAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGc                   <  2:3550025/91‑1 (MQ=255)
                                                                          aaaCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAATTTCAATTTTTAAAAATATATTACATAGCTTACTGcc                  >  2:3916202/1‑90 (MQ=255)
                                                                           aaCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTa                 <  2:1494676/91‑1 (MQ=255)
                                                                            aCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAt                >  1:694296/1‑91 (MQ=255)
                                                                            aCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAt                <  2:2815484/91‑1 (MQ=255)
                                                                             cTGATGATATCAAAAAAGGTAATCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATCGCTTACTGCTAtg               <  2:915238/91‑1 (MQ=255)
                                                                              tgatgaTATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtga              >  1:1115918/1‑91 (MQ=255)
                                                                               gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTTAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat             >  2:3947447/1‑91 (MQ=255)
                                                                               gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat             <  2:1591475/91‑1 (MQ=255)
                                                                               gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat             >  2:1469991/1‑91 (MQ=255)
                                                                               gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat             <  1:521623/91‑1 (MQ=255)
                                                                                atgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgatt            >  2:2099586/1‑91 (MQ=255)
                                                                                 tgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattg           <  2:2732898/91‑1 (MQ=255)
                                                                                 tgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattg           <  2:568272/91‑1 (MQ=255)
                                                                                  gatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTGGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattga          <  2:1354884/91‑1 (MQ=255)
                                                                                       cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt     <  1:1654362/91‑1 (MQ=255)
                                                                                       cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt     <  1:2104944/91‑1 (MQ=255)
                                                                                       cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAACTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt     >  2:889308/1‑91 (MQ=255)
                                                                                        aaaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTc    >  1:2963861/1‑91 (MQ=255)
                                                                                         aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa   <  2:3627048/91‑1 (MQ=255)
                                                                                         aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa   >  1:3727354/1‑91 (MQ=255)
                                                                                         aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa   >  1:3044811/1‑91 (MQ=255)
                                                                                          |                                                                                          
CAATATCACTATTGTTATCTAACGATGTTTCAAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAA  >  USA300TCH1516_ALE/1856820‑1857000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.