BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1856910 =	248 (1.220)	23 (0.130)	11/144	NT	9.8%	intergenic (‑595/+105)	aroF/USA300HOU_RS09235	Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein
*	?	USA300TCH1516_ALE	1856940 =	199 (1.090)	23 (0.130)	11/144	NT	9.8%	intergenic (‑625/+75)	aroF/USA300HOU_RS09235	Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein

Only 100 of 293 total aligned reads displayed.

AAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATGTA  >  USA300TCH1516_ALE/1856851‑1857030

aaaCAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTAt                                                                                           >  2:594202/1‑91 (MQ=255)

 aacaacATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTAtt                                                                                          <  1:2260037/91‑1 (MQ=255)

   caacaTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACC‑TTTATTTTg                                                                                       <  1:1541331/91‑1 (MQ=255)

     acaTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAACAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGa                                                                                      >  2:3907009/1‑91 (MQ=255)

     acaTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGa                                                                                      <  2:2849025/91‑1 (MQ=255)

      caTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGaa                                                                                     <  1:1030498/91‑1 (MQ=255)

      caTAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGaa                                                                                     >  2:70104/1‑91 (MQ=255)

         aaaTACATGAACTGATCGCATTGGCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAAtt                                                                                  <  2:3024793/91‑1 (MQ=255)

           aTACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCa                                                                                >  2:1607652/1‑91 (MQ=255)

             aCATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAAt                                                                              >  2:1868364/1‑91 (MQ=255)

              cATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAAtt                                                                             <  1:1674485/91‑1 (MQ=255)

               aTGAAATGCTCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGACTGCCTACCTTTTATCTTGAAATTCAAttt                                                                            >  2:1675926/1‑91 (MQ=255)

                  aaaTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTa                                                                         >  1:1715775/1‑91 (MQ=255)

                   aaTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTaa                                                                        <  1:1854422/91‑1 (MQ=255)

                   aaTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTaa                                                                        >  2:1341470/1‑91 (MQ=255)

                    aTGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTaaa                                                                       <  2:994187/91‑1 (MQ=255)

                        tCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAata                                                                   >  2:867183/1‑91 (MQ=255)

                        tCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAata                                                                   >  2:1028469/1‑91 (MQ=255)

                        tCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAata                                                                   <  2:2691316/91‑1 (MQ=255)

                         cGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatat                                                                  >  2:1735119/1‑91 (MQ=255)

                          gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                                                 >  1:1021012/1‑91 (MQ=255)

                          gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                                                 >  1:547262/1‑91 (MQ=255)

                          gCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatata                                                                 <  2:2680393/91‑1 (MQ=255)

                           cATTGCCTTTCAAAATAATCTGATGATATCAAATGAGGTAAGCACCTGAATGGCTACCTTTTATTTTGAAATTCAATTTTTAAAAatatat                                                                <  2:1946369/91‑1 (MQ=255)

                           cATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAatatat                                                                >  2:2587144/1‑91 (MQ=255)

                            aTTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATAtt                                                               >  2:3492640/1‑91 (MQ=255)

                             ttGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTa                                                              >  2:321678/1‑91 (MQ=255)

                              tGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTAc                                                             <  1:2717534/91‑1 (MQ=255)

                                ccTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACAt                                                           <  2:2693374/91‑1 (MQ=255)

                                 cTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATa                                                          <  1:3846919/91‑1 (MQ=255)

                                  tttCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAg                                                         <  1:3909558/91‑1 (MQ=255)

                                    tCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCt                                                       >  1:750187/1‑91 (MQ=255)

                                    tCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCt                                                       <  1:2400786/91‑1 (MQ=255)

                                       aaaTAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTAc                                                    >  1:2267534/1‑91 (MQ=255)

                                          tAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGc                                                 <  2:3550025/91‑1 (MQ=255)

                                           aaaCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCt                                                <  1:2959731/91‑1 (MQ=255)

                                           aaaCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCt                                                <  1:3893580/91‑1 (MQ=255)

                                             aCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAt                                              <  2:290974/91‑1 (MQ=255)

                                             aCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAt                                              >  1:694296/1‑91 (MQ=255)

                                             aCTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAt                                              <  2:2815484/91‑1 (MQ=255)

                                              cTGATGATATCAAAAAAGGTAATCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATCGCTTACTGCTAtg                                             <  2:915238/91‑1 (MQ=255)

                                               tgatgaTATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtga                                            <  1:3284519/91‑1 (MQ=255)

                                                gatgatATCCAAAAAGGTAAGCACCTGAATGGCTACCTTTTCATCTCAAATTGAATATCTAAAAACATATTACATAGCTTCCTGCTAtgaa                                           >  2:2616716/1‑90 (MQ=255)

                                                gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTTAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat                                           >  2:3947447/1‑91 (MQ=255)

                                                gatgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgat                                           >  2:1469991/1‑91 (MQ=255)

                                                 atgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgatt                                          >  2:1509019/1‑91 (MQ=255)

                                                  tgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattg                                         >  1:507710/1‑91 (MQ=255)

                                                  tgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattg                                         >  1:976898/1‑91 (MQ=255)

                                                  tgatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTAAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattg                                         <  2:568255/91‑1 (MQ=255)

                                                   ttcaaaataaaaggtaggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattga                                        >  1:3435932‑M2/39‑91 (MQ=255)

                                                   gatATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTAtgattga                                        <  1:1336983/91‑1 (MQ=255)

                                                        cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt                                   >  2:2385047/1‑91 (MQ=255)

                                                        cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt                                   <  1:2104944/91‑1 (MQ=255)

                                                        cAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAACTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGattatt                                   >  2:889308/1‑91 (MQ=255)

                                                         aaaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTc                                  >  1:1140503/1‑91 (MQ=255)

                                                          taaaaggtaggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 >  1:3498401‑M2/32‑91 (MQ=255)

                                                          aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 <  2:3353354/91‑1 (MQ=255)

                                                          aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 >  1:3727354/1‑91 (MQ=255)

                                                          aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 >  1:3044811/1‑91 (MQ=255)

                                                          aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 <  1:1447830/91‑1 (MQ=255)

                                                          aaaaaGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCa                                 <  1:918958/91‑1 (MQ=255)

                                                            aaaggtaggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTGAAc                               >  1:3192520‑M2/30‑91 (MQ=255)

                                                             AAGGTAAGCACCTGAATGCCTACCTTTTATTTTTAAACTCAATTTTCAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACg                              <  1:3153509‑M1/91‑1 (MQ=255)

                                                             AAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACg                              >  1:3640475‑M1/1‑91 (MQ=255)

                                                              aggtaggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGa                             >  2:2488985‑M2/28‑91 (MQ=255)

                                                               ggtaggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAt                            >  1:2197017‑M2/27‑91 (MQ=255)

                                                               GGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAt                            <  2:3576421‑M1/91‑1 (MQ=255)

                                                               GGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAt                            <  2:2763168‑M1/91‑1 (MQ=255)

                                                                GTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAtt                           <  1:2523334‑M1/91‑1 (MQ=255)

                                                                GTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAtt                           <  1:1602699‑M1/91‑1 (MQ=255)

                                                                GTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATCATTCAACGAtt                           <  1:3580037‑M1/91‑1 (MQ=255)

                                                                 TAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAttt                          <  2:1165780‑M1/91‑1 (MQ=255)

                                                                 TAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGAttt                          >  1:529543‑M1/1‑91 (MQ=255)

                                                                   ggcattcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGCTTTTa                        >  2:1760687‑M2/23‑91 (MQ=255)

                                                                   aGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTa                        >  2:2289461/1‑91 (MQ=255)

                                                                   aGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTa                        <  2:1205184/91‑1 (MQ=255)

                                                                     cACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGt                      >  2:2019349/1‑91 (MQ=255)

                                                                      aCCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTa                     >  1:2606795/1‑91 (MQ=255)

                                                                       ttcaggtgcttaccttttATTTTGAAATTCAATTTTTAAACATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTaa                    >  2:3252355‑M2/19‑91 (MQ=255)

                                                                       ttcaggtgcttaccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTaa                    >  1:2527513‑M2/19‑91 (MQ=255)

                                                                       ccTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTaa                    >  2:2185832/1‑91 (MQ=255)

                                                                         tGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATc                  >  2:2079892/1‑91 (MQ=255)

                                                                         tGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATc                  <  2:3635995/91‑1 (MQ=255)

                                                                           aaTGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCtt                <  2:2427974/91‑1 (MQ=255)

                                                                             tGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAg              >  2:3402633/1‑91 (MQ=255)

                                                                             tGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAg              >  1:552855/1‑91 (MQ=255)

                                                                              gCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGt             <  1:2506929/91‑1 (MQ=255)

                                                                              gCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGCAATCTTAGt             >  1:3786192/1‑91 (MQ=255)

                                                                               ccTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTc            <  2:2375111/91‑1 (MQ=255)

                                                                                 taccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCAt          <  1:2305891‑M2/83‑1 (MQ=255)

                                                                                 taccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCAt          >  2:1787885‑M2/9‑91 (MQ=255)

                                                                                 taccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCAt          <  1:2925129‑M2/83‑1 (MQ=255)

                                                                                   ccttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTg        >  1:1243996‑M2/7‑91 (MQ=255)

                                                                                     ttttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGaa      <  2:3415858‑M2/87‑1 (MQ=255)

                                                                                      tttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAAt     <  2:1362573‑M2/88‑1 (MQ=255)

                                                                                      tttATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAAt     >  1:852777‑M2/4‑91 (MQ=255)

                                                                                       aaaTTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATg    >  1:3355207/3‑91 (MQ=255)

                                                                                        tATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATGt   >  1:1700720‑M2/2‑91 (MQ=255)

                                                                                         aTTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATGTa  >  1:2897114/1‑91 (MQ=255)

                                                                                         aTTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATGTa  <  1:274753/91‑1 (MQ=255)

AAACAACATAAATACATGAAATGATCGCATTGCCTTTCAAAATAAACTGATGATATCAAAAAAGGTAAGCACCTGAATGCCTACCTTTTATTTTGAAATTCAATTTTTAAAAATATATTACATAGCTTACTGCTATGATTGATTATTCAACGATTTTAGTAATCTTAGTCATTGAATGTA  >  USA300TCH1516_ALE/1856851‑1857030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.