BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1946068 =	207 (1.020)	12 (0.070)	5/142	NT	6.4%	intergenic (+119/+355)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1946105 =	165 (0.910)	12 (0.070)	5/142	NT	6.4%	intergenic (+156/+318)	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein

Only 100 of 297 total aligned reads displayed.

AAAACATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCA  >  USA300TCH1516_ALE/1945978‑1946158

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            >  1:2951825/1‑91 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            >  1:749251/1‑91 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            >  1:3084999/1‑91 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            >  2:2537221/1‑91 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            <  2:1292619/91‑1 (MQ=255)

aaaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaa                                                                                            <  2:584557/91‑1 (MQ=255)

 tgcgtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatattttttta                                                                                            <  1:3773684‑M1/1‑1 (MQ=255)

 tgcgtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatattttttta                                                                                            <  1:2604078‑M1/1‑1 (MQ=255)

 aaaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑aaaaaaa                                                                                           <  1:1239692/91‑1 (MQ=255)

  gcgtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttaa                                                                                           <  1:2024407‑M1/2‑1 (MQ=255)

  aaCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAAc                                                                                          <  1:2245822/91‑1 (MQ=255)

   aCATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAAcc                                                                                         >  1:183757/1‑91 (MQ=255)

    gtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAAcc                                                                                         <  2:1106815‑M1/4‑1 (MQ=255)

    gtgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAAcc                                                                                         <  1:2613140‑M1/4‑1 (MQ=255)

     tgttattatataaatgtaaaaataagacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCa                                                                                        >  1:450929‑M1/87‑91 (MQ=255)

     aTTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCAt                                                                                       <  1:253585/91‑1 (MQ=255)

     aTTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCAt                                                                                       >  1:397867/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTc                                                                                     >  2:1638409/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTc                                                                                     >  2:2321637/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTc                                                                                     >  2:1484187/1‑91 (MQ=255)

       taataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACATCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTc                                                                                     <  2:2067941/91‑1 (MQ=255)

        aataaCTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAGAAAACCATTcc                                                                                    >  1:3586709/1‑91 (MQ=255)

         ataaCGAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGGCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCg                                                                                   <  2:1568907/91‑1 (MQ=255)

          taactaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGc                                                                                  <  2:1250613/91‑1 (MQ=255)

          taactaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGc                                                                                  >  1:3612275/1‑91 (MQ=255)

          gaactaacACTATCTTACAAACCACCTAGCCCAAAATTTATTAAAGCGTCATTTTTATTTCAATTAAAAAAAAAA‑AAAAAAACCATTTCGc                                                                                  <  2:1612479/90‑1 (MQ=255)

           aactaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCa                                                                                 <  2:787283/91‑1 (MQ=255)

           aactaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCa                                                                                 <  2:3597226/91‑1 (MQ=255)

            actaacCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCAt                                                                                <  1:2745637/91‑1 (MQ=255)

                ccccTTTCTTGCAAACCACCTAGCCCATAACATATTAAAACATCATTGTAATTTCTATTAGCGGAAAAA‑AACAAAACCATTCCGCATTAAc                                                                            >  2:1941124/2‑91 (MQ=255)

                    tttCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTg                                                                        >  1:2783947/1‑91 (MQ=255)

                     ttCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTgg                                                                       >  1:1906032/1‑91 (MQ=255)

                     ttCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTgg                                                                       >  1:3457345/1‑91 (MQ=255)

                      tCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGc                                                                      <  1:3176410/91‑1 (MQ=255)

                      tCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGc                                                                      >  2:3074464/1‑91 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTTTTTCAATTAGCGGAAAAT‑AAAAAAATCATTCCGTATTAATTTTGGCTAGt                                                                  >  2:3222766/1‑91 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGt                                                                  >  1:2182002/1‑91 (MQ=255)

                          aCAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGt                                                                  >  1:1614611/1‑91 (MQ=255)

                              gacgacatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTgg                                                               >  2:1183878‑M1/62‑91 (MQ=255)

                              accaccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGa                                                              <  2:2960346/91‑1 (MQ=255)

                                 accTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAAta                                                           <  2:2007227/91‑2 (MQ=255)

                                 accTAGCCCATAATATAATAAAACGTCATTTTTATTTCAATTAGAGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           <  2:1860835/91‑1 (MQ=255)

                                  ccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATgg                                                          >  1:1361222/1‑91 (MQ=255)

                                  ccTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATgg                                                          >  2:2702069/1‑91 (MQ=255)

                                  acatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGGAATg                                                           >  1:2025281‑M1/58‑91 (MQ=255)

                                  acatgcgcgaacatgtcgtctaagcaagccaaacgctggcttctaaaatatttttttAACCATTCCGCATTAACTTTGGCAAGTTGAAATg                                                           >  2:486542‑M1/58‑91 (MQ=255)

                                   cTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAATAAAAAAAACCATTCCGCTTTAACTTTGGCAAGTTGGAATgg                                                          >  2:3952801/1‑91 (MQ=255)

                                   cTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGt                                                         <  2:3815002/91‑1 (MQ=255)

                                   cTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGt                                                         >  1:1789698/1‑91 (MQ=255)

                                    tAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑GAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGtt                                                        >  2:3475751/1‑91 (MQ=255)

                                    tAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGtt                                                        >  1:616422/1‑91 (MQ=255)

                                    tAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGtt                                                        <  2:2021898/91‑1 (MQ=255)

                                     aGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTa                                                       <  2:2290404/91‑1 (MQ=255)

                                      tcccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaa                                                      >  1:3144659/2‑91 (MQ=255)

                                       cccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaa                                                     <  1:2680246/91‑1 (MQ=255)

                                        ccATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTaaaa                                                    >  1:774758/1‑91 (MQ=255)

                                            aataTAGTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCTCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAat                                                <  2:696954/91‑1 (MQ=255)

                                             atatatTAAAACGTCATTTTTTTTTTTTTTTGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAata                                               >  2:2191215/1‑91 (MQ=255)

                                             atatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAata                                               <  1:2991326/91‑1 (MQ=255)

                                              tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              >  2:1590092/1‑91 (MQ=255)

                                              tatatTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAatat                                              >  1:1706461/1‑91 (MQ=255)

                                               atatTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAtt                                             >  1:2152282/1‑91 (MQ=255)

                                               atatTAAAACGTCATTTTTATTTCAATTAGCGAAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAtt                                             <  2:267215/91‑1 (MQ=255)

                                                taatAAAACGTCATTTTTATTTCAATTAGAGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATAttt                                            <  2:2049063/88‑1 (MQ=255)

                                                  ttAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                          >  1:1740075/1‑91 (MQ=255)

                                                  ttAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTa                                          >  2:1059996/1‑91 (MQ=255)

                                                    aaaaCGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGa                                        >  1:3280484/1‑91 (MQ=255)

                                                      aaCGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAg                                      <  2:2932694/91‑1 (MQ=255)

                                                       aCGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAATAAAATATTTTAGAAGc                                     <  2:3788751/91‑1 (MQ=255)

                                                       aCGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGc                                     >  2:2376188/1‑91 (MQ=255)

                                                        cGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                    >  2:3355132/1‑91 (MQ=255)

                                                        cGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGcc                                    <  1:112934/91‑1 (MQ=255)

                                                        cGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTGTAGAAGcc                                    <  1:2273407/91‑1 (MQ=255)

                                                         gTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCa                                   <  2:610173/91‑1 (MQ=255)

                                                           cATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGc                                 >  1:185049/1‑91 (MQ=255)

                                                            aTTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCg                                <  1:3757184/91‑1 (MQ=255)

                                                               tttATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGttt                             <  1:3484346/91‑1 (MQ=255)

                                                                   tttCAATTAGCGGAACAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATACTTTAGAAGCCAGCGTTTGgct                         >  2:2146231/1‑91 (MQ=255)

                                                                   tttCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                         <  1:2711496/91‑1 (MQ=255)

                                                                   tttCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgct                         <  1:2003428/91‑1 (MQ=255)

                                                                      cAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgc                      <  2:1169895/91‑1 (MQ=255)

                                                                      aaaTTAGCAGAAAAT‑AAGAAAACTATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCTGCGTTTGgcttgc                      <  2:3690334/90‑1 (MQ=255)

                                                                        aTTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgctt                    >  1:2448835/1‑91 (MQ=255)

                                                                        aTTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGgcttgctt                    >  2:3292931/1‑91 (MQ=255)

                                                                              ggAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga              <  1:2344978/91‑1 (MQ=255)

                                                                              ggAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga              >  1:1988698/1‑91 (MQ=255)

                                                                              ggAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga              >  1:388851/1‑91 (MQ=255)

                                                                              ggAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAgacga              <  1:1004180/91‑1 (MQ=255)

                                                                                aaaaT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACa            >  2:314638/1‑91 (MQ=255)

                                                                                 aaaT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACAt           >  1:919156/1‑91 (MQ=255)

                                                                                  aaT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATg          >  2:2821469/1‑91 (MQ=255)

                                                                                      aaaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTc       >  1:3311682/1‑91 (MQ=255)

                                                                                       aaaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATgcgcg      <  2:3581219/91‑5 (MQ=255)

                                                                                        aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc     >  2:3763906/1‑91 (MQ=255)

                                                                                        aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc     >  1:3428181/1‑91 (MQ=255)

                                                                                        aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc     <  1:3640688/91‑1 (MQ=255)

                                                                                        aaaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgc     >  1:1559434/1‑91 (MQ=255)

                                                                                         aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg    >  2:1429702/1‑91 (MQ=255)

                                                                                         aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg    >  2:1827090/1‑91 (MQ=255)

                                                                                         aaaaCCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTcgcg    <  2:2034646/91‑1 (MQ=255)

AAAACATTAATAACTAACCCTTTCTTACAAACCACCTAGCCCATAATATATTAAAACGTCATTTTTATTTCAATTAGCGGAAAAT‑AAAAAAACCATTCCGCATTAACTTTGGCAAGTTGGAATGGTTAAAAAAATATTTTAGAAGCCAGCGTTTGGCTTGCTTAGACGACATGTTCGCGCA  >  USA300TCH1516_ALE/1945978‑1946158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.