| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1970896 | 206 (1.010) | 14 (0.080) | 9/142 | NT | 6.9% | intergenic (+85/‑648) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1970915 | 197 (1.090) | intergenic (+104/‑629) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein | |||||
Only 100 of 405 total aligned reads displayed.
AAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATT > USA300TCH1516_ALE/1970806‑1970986 | ataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACa < 1:1709947‑M1/9‑1 (MQ=255)ataaatatgagggaagcgaaaatcactacaagcaatgtcttcctataatttgtaaacataggttcatttgagttttaaaaaaGAGATGACa > 2:3615525‑M1/83‑91 (MQ=255)aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 2:3896861‑M1/1‑91 (MQ=255) aGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAt > 1:2911034/1‑91 (MQ=255) tAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCCTATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTa > 2:1615528/1‑91 (MQ=255) gcgCAGGTTAAGTTCTCGATCACAACTATATTTATTAGTAACAGCATCTTTATTTTTCTAAATTACATCCCAAATAACCGCGATGACATTa > 2:430630/3‑91 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAt > 1:319408/1‑91 (MQ=255) gTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAtt > 2:1683273/1‑91 (MQ=255) tACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAg < 1:294570/91‑1 (MQ=255) taagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGa > 1:198838‑M1/71‑91 (MQ=255) aCGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGa > 1:3629309/1‑91 (MQ=255) cGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGat < 2:3492884/91‑1 (MQ=255) gcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATAttt > 1:2564577‑M1/68‑91 (MQ=255) gcgaaaatcaatacaaacaatgtcttcctataagttgtaaacataaggtcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATAttt > 2:2409584‑M1/68‑91 (MQ=255) tctcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATAtt > 1:3898944/1‑91 (MQ=255) ctcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAataaatatctaatttct < 1:3367069‑M1/91‑18 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTc > 2:2782686/1‑91 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATCCCCAATAAACGAGATGCCATTAGATATTAGATATTTc > 2:1205932/1‑91 (MQ=255) cGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCt < 1:764189/91‑1 (MQ=255) gATGACAACTAGTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAACTAAACGAGATGACATTAGAAATTAGATATTTCTt > 2:1762204‑M2/1‑90 (MQ=255) aTCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtg < 2:2576264‑M2/91‑3 (MQ=255) tcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGt > 2:2364279‑M1/61‑91 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgt > 2:282736‑M2/1‑88 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc < 2:2882355‑M2/91‑5 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 1:3761824‑M2/1‑87 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc < 1:529751‑M2/91‑5 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 2:2941758‑M2/1‑87 (MQ=255) ctacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCAt > 1:1630458‑M1/58‑91 (MQ=255) caACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcat < 2:2018972‑M2/91‑7 (MQ=255) tacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCAtc > 1:727076‑M1/57‑91 (MQ=255) aaCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatc < 2:1456375‑M2/91‑8 (MQ=255) aCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatct < 2:1445385‑M2/91‑9 (MQ=255) aCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatct > 2:3704400‑M2/1‑83 (MQ=255) tATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATctct < 1:3820427/91‑1 (MQ=255) aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTCGAAATTAGATATTTCTTGTCATctct > 2:2235806‑M1/54‑91 (MQ=255) tttATTAATAACAGCATATTTATTTTTTAAAATTAAATGCAAAATAACCGAGATGACATTAGAAATGCGATATTTCTTGTCATCTCttttt > 2:3676952/1‑91 (MQ=255) tgtcaacctataatttgtaaacataagttcatttgatttttaaaaaaGGGATGACATTAGGAATTAGATATTTCTTGTCATCTCTTTTTTa > 1:1484597‑M1/48‑91 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa > 2:581242/1‑91 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa > 2:315949/1‑91 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 2:3170856/91‑1 (MQ=255) ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa > 2:1970218/1‑91 (MQ=255) taGTAACAGCATATTTATTTTTTAAAATTAAATCCCACATAAACGACATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaaa > 1:3152978/1‑91 (MQ=255) gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt < 2:1722315/91‑1 (MQ=255) gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt < 2:3274092/91‑1 (MQ=255) aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa > 1:2145130/1‑91 (MQ=255) gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATg < 2:3034602/91‑1 (MQ=255) atatTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGATATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGaa > 1:1691319/1‑91 (MQ=255) atatTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGaa < 1:2651631/91‑1 (MQ=255) tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc > 1:3247271/1‑91 (MQ=255) atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt > 1:3109269/1‑91 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt > 1:1868502/1‑91 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt > 2:2218762/1‑91 (MQ=255) ttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTa > 1:1371157/1‑91 (MQ=255) tatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTAt < 2:3109561/91‑1 (MQ=255) atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg > 1:96772/1‑91 (MQ=255) ttttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGt < 2:1747248/91‑1 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGtt > 1:3396143/1‑91 (MQ=255) ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 2:518420/91‑1 (MQ=255) tttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTa < 2:3079720/91‑1 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc < 1:3571563/91‑1 (MQ=255) ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc > 2:2658625/1‑91 (MQ=255) aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa > 2:397892/1‑91 (MQ=255) aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa > 1:3536620/1‑91 (MQ=255) aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACGCAAATGAACTTATGTTTACaaa < 2:3532266/91‑1 (MQ=255) aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATtata > 1:1183482/1‑91 (MQ=255) aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATtata > 1:47010/1‑91 (MQ=255) aTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg < 2:2613289/91‑1 (MQ=255) gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa < 2:2125262/91‑1 (MQ=255) ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg < 1:1515124/91‑1 (MQ=255) ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg > 1:2431046/1‑91 (MQ=255) aaaTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGAc > 1:2406209/1‑91 (MQ=255) aaTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACa < 2:866851/91‑1 (MQ=255) aTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAt < 1:1065938/91‑1 (MQ=255) aaaCGAGATGACATTAGAAATTATATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGGACTTATGTTTACAAATTATAGGAAGACAttg < 2:3015496/91‑1 (MQ=255) aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgt < 2:704182/91‑1 (MQ=255) aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgt > 1:1721119/1‑91 (MQ=255) aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACGCAAATGAACTTATGGTTACAAATTATAGGAAGACAttgt < 2:800947/91‑1 (MQ=255) cGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgttt > 1:3021496/1‑91 (MQ=255) gagaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatag > 1:1918283‑M1/1‑9 (MQ=255) gagaTGACAagaaatatctaatttctaaggtcatctcgtttctttggcatttaattttaaaaaataaatatgctgttactaataaaaatag < 2:3758489‑M1/91‑83 (MQ=255) agaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagt < 1:2838088‑M1/91‑84 (MQ=255) gaagacaagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagtt < 2:1882417‑M1/88‑85 (MQ=255) gaTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagtt > 1:2730730‑M1/1‑7 (MQ=255) aTGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttg > 2:2510578‑M1/1‑6 (MQ=255) aTGACATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttt < 2:3329557‑M2/91‑67 (MQ=255) ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg > 2:292622‑M1/1‑91 (MQ=255) tGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgt < 2:3756892‑M1/91‑87 (MQ=255) tGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgt > 2:276667‑M1/1‑5 (MQ=255) tGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgt < 1:1277360‑M1/91‑87 (MQ=255) tGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgt > 1:1776749‑M1/1‑5 (MQ=255) tGACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgt > 1:1777029‑M1/1‑5 (MQ=255) gACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtg > 2:2006323‑M1/1‑4 (MQ=255) gACAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtg > 2:2305672‑M1/1‑4 (MQ=255) aCAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtga > 1:1849702‑M1/1‑3 (MQ=255) ACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa > 2:2729447‑M1/1‑91 (MQ=255) cAagaaatatctaatttctaatgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtgat > 2:1171109‑M1/1‑2 (MQ=255) cATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtgat < 1:789547‑M2/91‑71 (MQ=255) cATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatagttgtgat < 2:1809764‑M2/91‑71 (MQ=255) CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt < 2:1256507‑M1/91‑1 (MQ=255) CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt > 1:856684‑M1/1‑91 (MQ=255) | AAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATT > USA300TCH1516_ALE/1970806‑1970986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |