BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	204 (1.000)	29 (0.150)	12/148	NT	12.8%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082667 =	207 (1.100)	29 (0.150)	12/148	NT	12.8%	intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 314 total aligned reads displayed.

TTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAA  >  USA300TCH1516_ALE/2082549‑2082729

ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACCAACGTaaa                                                                                            >  2:3656538/1‑91 (MQ=255)

ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaa                                                                                            >  1:3923298/1‑91 (MQ=255)

ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaa                                                                                            >  2:51250/1‑91 (MQ=255)

aaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataata                                                                                            >  1:1235968‑M1/91‑91 (MQ=255)

aaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataata                                                                                            <  2:3818179‑M1/1‑1 (MQ=255)

   tATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAgg                                                                                         <  1:2418815/91‑1 (MQ=255)

   ctgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAgg                                                                                         <  1:1696582‑M1/4‑1 (MQ=255)

   ctgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAgg                                                                                         <  1:39632‑M1/4‑1 (MQ=255)

    aTCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGc                                                                                        <  1:1570631/91‑1 (MQ=255)

     gagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCa                                                                                       <  2:850370‑M1/6‑1 (MQ=255)

     gagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCa                                                                                       <  1:2096671‑M1/6‑1 (MQ=255)

       aGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAcc                                                                                     <  1:1630326/91‑1 (MQ=255)

        gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCGCATCTCTACAAAGGTAAAAGGCAccc                                                                                    <  2:750441‑M2/82‑1 (MQ=255)

        gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAccc                                                                                    <  1:531586‑M2/82‑1 (MQ=255)

            gatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACg                                                                                <  1:1099296‑M2/86‑1 (MQ=255)

             atttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa                                                                               >  2:3857006‑M2/5‑91 (MQ=255)

              gatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGAt                                                                              >  1:1281147‑M1/77‑91 (MQ=255)

               atgaaagagtatttaaagcaactgacattaaataggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGAtt                                                                             >  1:3361009‑M1/76‑91 (MQ=255)

               atgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGAtt                                                                             >  1:3767835‑M1/76‑91 (MQ=255)

                tggaagagtatttaaagctactgacattaaaaaggtagagattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATtg                                                                            >  1:2981204‑M1/75‑91 (MQ=255)

                tgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATtg                                                                            >  1:2925679‑M1/75‑91 (MQ=255)

                tATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTg                                                                            <  2:873837‑M2/90‑1 (MQ=255)

                  ttatAGATCCAATTTATATAACTTTTGGCAAATCACATCAAACATTCGAGCATCACATCTCTACAAAAGTAAAAGGAACCCCACGACtgcg                                                                          >  2:3672192/1‑89 (MQ=255)

                  aaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATtgtg                                                                          >  2:2363018‑M1/73‑91 (MQ=255)

                   tataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTga                                                                         <  1:300173/91‑1 (MQ=255)

                   taaaGAACCAATTTATATAACTTTTGACAAATCACTTCAAACATGCAAACAACACATCTCTACAAATGTAAAAGGCACCCCACGATTGTga                                                                         <  2:2910068/88‑1 (MQ=255)

                    ataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTgag                                                                        >  2:249615/1‑91 (MQ=255)

                      aGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATCCAAGCATCACATCTCTACAAATGTAATAGGCACCCCACGATTGTGAGAt                                                                      >  2:3000027/1‑91 (MQ=255)

                       gAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATg                                                                     >  1:904349/1‑91 (MQ=255)

                       gAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATg                                                                     >  1:102717/1‑91 (MQ=255)

                       gAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGT‑AAAGGCACCCCACGATTGTGAGATGc                                                                    <  2:3660006/91‑1 (MQ=255)

                        aaCCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGc                                                                    <  1:2475585/91‑1 (MQ=255)

                          ccAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCt                                                                  >  1:3564970/1‑91 (MQ=255)

                           ttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATTGTGAGATGCCtt                                                                 >  2:540515‑M1/64‑91 (MQ=255)

                           ttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATTGTGAGATGCCtt                                                                 >  2:3692726‑M1/64‑91 (MQ=255)

                                tatataACTTTTGGCAAATCACTTCAAACATTCCAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                            <  2:1142058/91‑1 (MQ=255)

                                tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                            >  1:1187443/1‑91 (MQ=255)

                                 atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAATTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATtata                                                           <  1:2345310/91‑1 (MQ=255)

                                 atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGCTTGTGAGATGCCTTATtata                                                           >  2:2867760/1‑91 (MQ=255)

                                   ataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaaa                                                         >  2:853738/1‑91 (MQ=255)

                                   ataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaaa                                                         >  2:415826/1‑91 (MQ=255)

                                    taACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaaaa                                                        >  1:2881082/1‑91 (MQ=255)

                                      aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                      >  1:1308606/1‑91 (MQ=255)

                                      aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                      >  2:2620126/1‑91 (MQ=255)

                                       cTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                     >  1:3078339/1‑91 (MQ=255)

                                         tttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaaa                                                   <  1:842398/91‑1 (MQ=255)

                                          ttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAg                                                  <  2:1258345/91‑1 (MQ=255)

                                            ggCAAAAAACTTCCAACCATCACGCTTCGCACCGCTACAGAAGTAAAAGGCGCCCAACGATGGTGAGATGCCTTATTATAAAATTAAAGAt                                                <  2:1705818/91‑1 (MQ=255)

                                              cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGCTTGTGAGATGCCTTATTATAAAATTAAAGATTa                                              >  2:305151/1‑91 (MQ=255)

                                              cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTa                                              >  1:3205344/1‑91 (MQ=255)

                                              cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTa                                              >  1:994687/1‑91 (MQ=255)

                                                 aTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                           >  2:2598914/1‑91 (MQ=255)

                                                 aTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                           <  1:1988804/91‑1 (MQ=255)

                                                  tCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAt                                          <  2:3491929/91‑1 (MQ=255)

                                                   cACTTCAGGCATTCGAGCGTCACAGGTCTACATATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAtt                                         <  2:3454337/91‑1 (MQ=255)

                                                   cACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAtt                                         <  2:2781009/91‑1 (MQ=255)

                                                   cACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAtt                                         <  2:3170340/91‑1 (MQ=255)

                                                     cTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                       >  2:600847/1‑91 (MQ=255)

                                                     cTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                       >  2:1677462/1‑91 (MQ=255)

                                                      ttCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTaa                                      >  1:3145294/1‑91 (MQ=255)

                                                      ttCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTaa                                      >  1:77862/1‑91 (MQ=255)

                                                       tCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAg                                     >  1:2199649/1‑91 (MQ=255)

                                                        cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                    <  2:2102974/91‑1 (MQ=255)

                                                        cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                    >  2:792667/1‑91 (MQ=255)

                                                         aaaCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGtt                                   <  2:1188871/91‑1 (MQ=255)

                                                           aCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCa                                 >  2:3296902/1‑91 (MQ=255)

                                                             aTTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAat                               <  1:1975866/91‑1 (MQ=255)

                                                               tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                             <  2:3744146/91‑1 (MQ=255)

                                                               tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                             >  2:1907778/1‑91 (MQ=255)

                                                                cAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATc                            >  1:3291037/1‑91 (MQ=255)

                                                                cAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAGTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATGTAAGTTCAATATc                            <  2:2460925/91‑1 (MQ=255)

                                                                 aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCt                           <  2:3384750/91‑1 (MQ=255)

                                                                 aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTGCAATATCt                           >  1:508894/1‑91 (MQ=255)

                                                                   gCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAc                         >  1:3410515/1‑91 (MQ=255)

                                                                    cATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAcc                        >  2:726689/1‑91 (MQ=255)

                                                                     aTCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCt                       <  2:1901263/91‑1 (MQ=255)

                                                                      tCACATCTCTGCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                      >  2:323709/1‑91 (MQ=255)

                                                                      tCACATCTCTACAAATGTAAAAGGCACGCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                      >  1:1370650/1‑91 (MQ=255)

                                                                      tCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                      >  2:1758416/1‑91 (MQ=255)

                                                                         caTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttttt                   <  1:2644489/91‑1 (MQ=255)

                                                                          aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                  >  2:66029/1‑91 (MQ=255)

                                                                           tctcTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTaa                 >  2:2685856/1‑91 (MQ=255)

                                                                           tctcTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTaa                 >  2:3908948/1‑91 (MQ=255)

                                                                            ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAAt                >  2:104718/1‑91 (MQ=255)

                                                                            ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAAt                <  1:366307/91‑1 (MQ=255)

                                                                            ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAAt                >  1:3630077/1‑91 (MQ=255)

                                                                              cttcAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAATATTAAAGTTTAGAATTTAAGTTCAATATCTACCTTTTTAATGt              <  2:918184/88‑1 (MQ=255)

                                                                               tACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc             <  1:569162/91‑1 (MQ=255)

                                                                               gaCAAATGTAAAAGGCACCCCACGATTGTGAGAAGCCTTATTATAAAATTAAAGATGAGAATTTAAGTTCAATATCTACCTTTTTAATGTc             <  2:458737/90‑1 (MQ=255)

                                                                                aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCa            <  1:2242431/91‑1 (MQ=255)

                                                                                  tttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt          <  1:2808714‑M1/83‑1 (MQ=255)

                                                                                    aTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCTGTTg        >  2:1380473/1‑91 (MQ=255)

                                                                                     tGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc       >  1:811101/1‑91 (MQ=255)

                                                                                     tGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc       >  1:1068736/1‑91 (MQ=255)

                                                                                     tGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTAAATGTCAGTTGc       <  2:1566968/91‑1 (MQ=255)

                                                                                      gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt      <  1:2547363/91‑1 (MQ=255)

                                                                                        aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCttt    >  2:2656955/1‑91 (MQ=255)

                                                                                        aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCttt    >  2:1130814/1‑91 (MQ=255)

                                                                                         aaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTa   <  1:1904804/91‑1 (MQ=255)

                                                                                          AAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa  <  2:1440900‑M1/91‑1 (MQ=255)

TTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAA  >  USA300TCH1516_ALE/2082549‑2082729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.