BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	204 (1.000)	29 (0.150)	12/148	NT	12.8%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082667 =	207 (1.100)	29 (0.150)	12/148	NT	12.8%	intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 320 total aligned reads displayed.

AATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTT  >  USA300TCH1516_ALE/2082577‑2082757

taaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGATTGTGAGATGCCtta                                                                                            >  2:722228‑M1/63‑91 (MQ=255)

  tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttatt                                                                                          >  2:186788/1‑91 (MQ=255)

   ttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttatta                                                                                         >  2:3235087/1‑91 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        >  1:1187443/1‑91 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        <  1:21114/91‑1 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        <  2:1141971/91‑1 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        >  1:554885/1‑91 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        <  1:77127/91‑1 (MQ=255)

     atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAATTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATtata                                                                                       <  1:2345310/91‑1 (MQ=255)

     atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGCTTGTGAGATGCCTTATtata                                                                                       >  2:2867760/1‑91 (MQ=255)

     atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATtata                                                                                       >  1:2973047/1‑91 (MQ=255)

       actgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcatctcacaatcgtggggtgccttATTATaaa                                                                                     >  2:1115584‑M2/84‑91 (MQ=255)

          aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                                                  >  2:2620126/1‑91 (MQ=255)

          aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                                                  >  1:3196337/1‑91 (MQ=255)

           cTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                                                 >  1:3078339/1‑91 (MQ=255)

             tttGGCACATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaaa                                                                               <  1:1971862/91‑1 (MQ=255)

              ttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAg                                                                              <  2:3943201/91‑1 (MQ=255)

              ttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAg                                                                              <  2:1258345/91‑1 (MQ=255)

               tGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGa                                                                             <  2:1467525/91‑1 (MQ=255)

               tGGCAAATCACTTCAAACATTCAAGCATCACAGCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCGTATTATAAAATTAAAGa                                                                             <  2:1905756/91‑1 (MQ=255)

                ggCAAAAAACTTCCAACCATCACGCTTCGCACCGCTACAGAAGTAAAAGGCGCCCAACGATGGTGAGATGCCTTATTATAAAATTAAAGAt                                                                            <  2:1705818/91‑1 (MQ=255)

                 gCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                           >  1:3449312/1‑91 (MQ=255)

                 gCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                           <  1:2773516/91‑1 (MQ=255)

                  cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACGCCACGATTGTGAGATCCCTTCTTATAAAATTAAAGCTTa                                                                          >  2:828880/1‑91 (MQ=255)

                     aTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                                                       <  1:39357/91‑1 (MQ=255)

                     aTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                                                       >  1:1044739/1‑91 (MQ=255)

                     aTCACTTCAAACAGTCAAGCATCTCATCTCTACAGATGTAAGAGGCACCCCACGATTGTGAGATGCCTTATTTTAAAATTAAAGATTAGaa                                                                       <  2:776639/91‑1 (MQ=255)

                       cACTTCAAACATTCAAGCATCACATCTCTACTAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAtt                                                                     <  2:3454476/91‑1 (MQ=255)

                       cACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAtt                                                                     <  2:2781009/91‑1 (MQ=255)

                        aCTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAttt                                                                    <  1:128817/91‑1 (MQ=255)

                         cTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                                                   >  2:1677462/1‑91 (MQ=255)

                         cTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                                                   >  2:600847/1‑91 (MQ=255)

                          ttCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTaa                                                                  >  2:11946/1‑91 (MQ=255)

                           tCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAg                                                                 >  1:2199649/1‑91 (MQ=255)

                            cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                <  2:2666943/91‑1 (MQ=255)

                                   tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                                                         <  2:3045991/91‑1 (MQ=255)

                                    cAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATc                                                        >  1:3291037/1‑91 (MQ=255)

                                     aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCt                                                       >  1:1356001/1‑91 (MQ=255)

                                      aGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTa                                                      <  1:522294/91‑1 (MQ=255)

                                      aGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTa                                                      <  2:1948738/91‑1 (MQ=255)

                                      aGCATCACATCACTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTa                                                      <  1:3582709/91‑1 (MQ=255)

                                       gCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAc                                                     <  1:1635414/91‑1 (MQ=255)

                                        cATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAcc                                                    >  1:2496732/1‑91 (MQ=255)

                                          tCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                                                  >  2:1758416/1‑91 (MQ=255)

                                                ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAAt                                            <  1:366307/91‑1 (MQ=255)

                                                 tctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATg                                           <  2:2441105/91‑1 (MQ=255)

                                                 tctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATg                                           <  2:373136/91‑1 (MQ=255)

                                                    aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCa                                        <  1:2242431/91‑1 (MQ=255)

                                                    aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCa                                        >  2:1026654/1‑91 (MQ=255)

                                                     cAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAg                                       <  1:2985163/91‑1 (MQ=255)

                                                      tttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt                                      <  1:2808714‑M1/83‑1 (MQ=255)

                                                      aaaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt                                      <  2:432379/91‑1 (MQ=255)

                                                      aaaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt                                      <  1:2551950/91‑1 (MQ=255)

                                                         tGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc                                   <  1:1077930/91‑1 (MQ=255)

                                                         tGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc                                   >  1:810959/1‑91 (MQ=255)

                                                         ataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGc                                   <  1:1615465‑M1/86‑1 (MQ=255)

                                                          gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  <  2:855653/91‑1 (MQ=255)

                                                          gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  >  2:672801/1‑91 (MQ=255)

                                                          gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  >  1:2904148/1‑91 (MQ=255)

                                                          gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  >  2:272624/1‑91 (MQ=255)

                                                              aaggcatctcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                              >  2:540515‑M2/29‑91 (MQ=255)

                                                              AAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                              <  1:1980643‑M1/91‑1 (MQ=255)

                                                              AAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                              <  2:227881‑M1/91‑1 (MQ=255)

                                                               AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAACGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                             <  2:3249547‑M1/91‑1 (MQ=255)

                                                               AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                             <  1:1425475‑M1/91‑1 (MQ=255)

                                                               AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                             >  2:2947050‑M1/1‑91 (MQ=255)

                                                                GGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAAt                            <  2:2105012‑M1/91‑1 (MQ=255)

                                                                  catctcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATAc                          >  2:3369919‑M2/25‑91 (MQ=255)

                                                                  CACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATAc                          >  1:3632275‑M1/1‑91 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        <  2:2527327/91‑1 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        >  1:3888183/1‑91 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATCATAAAATTAAAGATTAGAATTTCAGTTCAATATCTACCTTTCTAATGTCCGTTGCTTTAAATAccc                        >  2:3652478/1‑89 (MQ=255)

                                                                     cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActct                       <  1:493819/91‑1 (MQ=255)

                                                                     cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActct                       <  1:9461/91‑1 (MQ=255)

                                                                     cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActct                       >  2:3319358/1‑91 (MQ=255)

                                                                     cccACGACTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActct                       <  2:3530605/91‑1 (MQ=255)

                                                                        acaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTc                    >  2:3897654‑M2/19‑91 (MQ=255)

                                                                        acaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAACGTCAGTTGCTTTAAATACTCTTTc                    >  2:3683051‑M2/19‑91 (MQ=255)

                                                                         caatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCa                   >  2:487021‑M2/18‑91 (MQ=255)

                                                                         cGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCa                   >  1:2049648/1‑91 (MQ=255)

                                                                          gATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCAt                  <  1:2140937/91‑1 (MQ=255)

                                                                          gATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCAt                  <  1:3141708/91‑1 (MQ=255)

                                                                          aatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCAt                  >  1:3767835‑M2/17‑91 (MQ=255)

                                                                          aatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTATTTAATGTCAGTTGCTTTAAATACTCTTTCAt                  >  1:3361009‑M2/17‑91 (MQ=255)

                                                                            ttGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCt                >  1:6520/1‑91 (MQ=255)

                                                                             tgtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCtt               >  2:3100046/1‑91 (MQ=255)

                                                                              gtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCTATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCttt              >  2:92704/1‑91 (MQ=255)

                                                                              gtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCttt              >  1:2703187/1‑91 (MQ=255)

                                                                              gtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCttt              >  2:849467/1‑91 (MQ=255)

                                                                                gagaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTtat            >  1:1904792/1‑91 (MQ=255)

                                                                                gagaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTtat            <  1:1847319/91‑1 (MQ=255)

                                                                                gagaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTtat            >  2:3396803/1‑91 (MQ=255)

                                                                                    tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc        <  2:851014‑M2/85‑1 (MQ=255)

                                                                                    tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc        <  2:1145165‑M2/85‑1 (MQ=255)

                                                                                    tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc        <  2:1372444‑M2/85‑1 (MQ=255)

                                                                                     gccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCa       >  2:2600047‑M2/6‑91 (MQ=255)

                                                                                      ccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAg      <  1:853473‑M2/87‑1 (MQ=255)

                                                                                         tATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGttt   <  2:3818179‑M2/90‑1 (MQ=255)

                                                                                         tATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGttt   >  1:1235968‑M2/2‑91 (MQ=255)

                                                                                          attatAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGtttt  <  1:1664596/91‑1 (MQ=255)

AATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTT  >  USA300TCH1516_ALE/2082577‑2082757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.