BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2241742 =	215 (1.060)	32 (0.180)	14/140	NT	15.3%	intergenic (‑385/+81)	murA2/fba	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase 2/Fructose‑bisphosphate aldolase
*	?	USA300TCH1516_ALE	2241776 =	166 (0.930)	32 (0.180)	14/140	NT	15.3%	intergenic (‑419/+47)	murA2/fba	UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase 2/Fructose‑bisphosphate aldolase

Only 100 of 318 total aligned reads displayed.

ATTATATCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAGCG  >  USA300TCH1516_ALE/2241652‑2241832

aTTATATCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATaaa                                                                                            >  2:977506/1‑91 (MQ=255)

aTTATATCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATaaa                                                                                            <  1:3402903/91‑1 (MQ=255)

  tataTCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATaaaaa                                                                                          <  2:144825/91‑1 (MQ=255)

  gtaaaattaaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttaaa                                                                                          >  1:1172364‑M1/89‑91 (MQ=255)

   taaaattaaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttaaaa                                                                                         <  1:1935158‑M1/4‑1 (MQ=255)

    tatCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAaag                                                                                        >  1:1674692/1‑91 (MQ=255)

     ttCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAaaga                                                                                       <  2:3276405/90‑1 (MQ=255)

     atCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAaaga                                                                                       <  1:1281689/91‑1 (MQ=255)

     aaattaaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAgaga                                                                                       <  1:3111372‑M1/6‑1 (MQ=255)

     aaattaaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAaaga                                                                                       <  1:2908423‑M1/6‑1 (MQ=255)

       attaaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAaagaag                                                                                     <  2:1539372‑M1/8‑1 (MQ=255)

         taaagagttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCa                                                                                   >  2:2047183‑M1/82‑91 (MQ=255)

         caatcaatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCa                                                                                   <  1:2812552/91‑1 (MQ=255)

         caatcaatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCa                                                                                   <  1:2452879/91‑1 (MQ=255)

          aatcaatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCaa                                                                                  >  1:1064788/1‑91 (MQ=255)

            tcaatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAac                                                                                >  1:3767631/1‑91 (MQ=255)

             caatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTGATACGACATAAAAAAGAAGCAAaca                                                                               <  2:579596/91‑1 (MQ=255)

              aatTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAacac                                                                              <  2:2931411/91‑1 (MQ=255)

               gttcggtacttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAaacaca                                                                             <  2:809422‑M1/16‑2 (MQ=255)

               atTTTGATATATTTTACCATTTTTACGCTTTCATTTTGAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACAcc                                                                             <  2:3841591/91‑1 (MQ=255)

               atTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTG‑TTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCa                                                                            >  1:976900/1‑91 (MQ=255)

                ttttGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCa                                                                            >  2:720749/1‑91 (MQ=255)

                 tttGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCAt                                                                           >  1:2395814/1‑91 (MQ=255)

                 tttGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCAt                                                                           >  1:2436080/1‑91 (MQ=255)

                 tcggtacttctaaccgcgctaaataattaatatatagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAAACACCAt                                                                           >  1:3246600‑M1/74‑91 (MQ=255)

                   tGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCAttt                                                                         >  2:2169199/1‑91 (MQ=255)

                   tGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCAttt                                                                         >  2:2653905/1‑91 (MQ=255)

                    gATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCAtttt                                                                        <  2:1261674/91‑1 (MQ=255)

                      tatatTTTACCATTTTTACTCTTTTATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGt                                                                      >  2:1955724/1‑91 (MQ=255)

                      tatatTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGt                                                                      <  1:734691/91‑1 (MQ=255)

                      tatatTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGt                                                                      <  1:1719937/91‑1 (MQ=255)

                       tttctaacctcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAAACACCATTTTGTc                                                                     >  2:3587984‑M1/68‑91 (MQ=255)

                       cttctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAAACACCATTTTGTc                                                                     >  1:3580300‑M1/68‑91 (MQ=255)

                        tatTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCt                                                                    <  1:460534/91‑1 (MQ=255)

                        tatTGTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCt                                                                    <  1:3288702/91‑1 (MQ=255)

                          ctaaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAAACACCATTTTGTCTGc                                                                  >  1:1071552‑M1/65‑91 (MQ=255)

                           gttACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTGTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGct                                                                 <  2:3128139/90‑1 (MQ=255)

                            ttACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGctt                                                                <  2:472336/91‑1 (MQ=255)

                            aaccgcgctaaataattaatatttagtctttaagttattaataacgtagggatattaattttAAAAGAAGCAAACACCATTTTGTCTGctt                                                                >  2:662788‑M1/63‑91 (MQ=255)

                             tACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAATAAAGAAGCAAACACCATTTTGTCTGcttc                                                               <  2:1592478/91‑1 (MQ=255)

                             tACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttc                                                               <  1:3308980/91‑1 (MQ=255)

                              aCCATTTTTCCGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttct                                                              >  1:1979140/1‑91 (MQ=255)

                              aCCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttct                                                              <  1:2227572/91‑1 (MQ=255)

                              aCCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttct                                                              >  1:2319052/1‑91 (MQ=255)

                              aCCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttct                                                              <  1:699369/91‑1 (MQ=255)

                               ccATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttctt                                                             <  1:2710970/91‑1 (MQ=255)

                               ccATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGcttctt                                                             <  1:2111389/91‑1 (MQ=255)

                                 aTTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCtttt                                                           <  1:631519/91‑1 (MQ=255)

                                 aTTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCtttt                                                           <  2:2740885/91‑1 (MQ=255)

                                 aTTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCtttt                                                           <  1:2182631/91‑1 (MQ=255)

                                   ttttACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTaa                                                         <  2:3545275/91‑1 (MQ=255)

                                    tttACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTaaa                                                        <  2:198152/91‑1 (MQ=255)

                                     ttACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTaaaa                                                       <  1:1338859/91‑1 (MQ=255)

                                       aCGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAAtt                                                     >  2:85697/1‑91 (MQ=255)

                                         gCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTaa                                                   <  1:3498478/91‑1 (MQ=255)

                                         gCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTaa                                                   <  1:283927/91‑1 (MQ=255)

                                           tttCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAata                                                 >  1:1494822/1‑91 (MQ=255)

                                              cATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATcc                                              <  1:3595506/91‑1 (MQ=255)

                                               aTTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATccc                                             <  1:660525/91‑1 (MQ=255)

                                               aTTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATccc                                             <  1:542135/91‑1 (MQ=255)

                                               aTTGTAAAATCAACCTGTTGTATTTATTACTCATACGACATAAAAAAGAAGCAAACTCCATTTTGTCTGCTTCTTTTAAAATTAATATccc                                             <  2:544503/91‑1 (MQ=255)

                                                 tttAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACTACTTTGTCTGCTTCTTTTAAAATTAATATACCTa                                           >  2:2788568/1‑91 (MQ=255)

                                                  ttAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCGAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTAc                                          <  1:3426062/91‑1 (MQ=255)

                                                  ttAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTAc                                          <  1:1248466/91‑1 (MQ=255)

                                                     aaaTCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGtt                                       <  2:1686419/91‑1 (MQ=255)

                                                      aaTCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGtta                                      <  2:2495156/91‑1 (MQ=255)

                                                       aTCAAACTGTTTTATTTATTACTTATACGACGTAAAAAAGAAGCGAACACCATGTTGGCTGCTTCTTTTAAAATTAATATCCCTACGttat                                     <  1:3160075/91‑1 (MQ=255)

                                                         cAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGttatta                                   >  1:3003824/1‑91 (MQ=255)

                                                         cAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGttatta                                   <  2:2582615/91‑1 (MQ=255)

                                                            aCTGTTTTATTTCTTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATtgata                                >  1:3058435/1‑91 (MQ=255)

                                                            aCTGTTTTATTTATTACTTATAAAACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATtaata                                <  2:1873170/91‑1 (MQ=255)

                                                             cTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATtaataa                               <  2:2101855/91‑1 (MQ=255)

                                                              tGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAAc                              <  2:616051/91‑1 (MQ=255)

                                                               gTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACt                             >  1:816898/1‑91 (MQ=255)

                                                               gTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATAAATATCCCTACGTTATTAATAACt                             >  2:3676541/1‑91 (MQ=255)

                                                                ttttATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACtt                            >  2:3767966/1‑91 (MQ=255)

                                                                 tttatttaTTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTa                           >  2:3908444/1‑91 (MQ=255)

                                                                  ttatttatTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAGATTAATATCCCTACGTTATTAATAACTTaa                          <  2:2292664/91‑1 (MQ=255)

                                                                   tatttattACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTaaa                         >  1:1002523/1‑91 (MQ=255)

                                                                    atttattACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAg                        >  2:1114040/1‑91 (MQ=255)

                                                                     tttattACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGa                       >  2:1738047/1‑91 (MQ=255)

                                                                      ttattaCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGAc                      >  1:3523235/1‑91 (MQ=255)

                                                                      ttattaCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGAc                      <  1:3214627/91‑1 (MQ=255)

                                                                         ttaCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCTCTACGTTATTAATAACTTAAAGACTaa                   <  2:2876116/91‑1 (MQ=255)

                                                                         ttaCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTaa                   <  2:1725478/91‑1 (MQ=255)

                                                                         ttaCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTaa                   >  2:1098490/1‑91 (MQ=255)

                                                                           aCTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAat                 >  2:954327/1‑91 (MQ=255)

                                                                            cTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAata                >  2:2447586/1‑91 (MQ=255)

                                                                               ataCGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATatta             <  1:154711/91‑1 (MQ=255)

                                                                               ataCGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATatta             <  1:2059207/91‑1 (MQ=255)

                                                                                taCGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATattaa            <  1:3835108/91‑1 (MQ=255)

                                                                                 aCGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAGTATCCCTACGTTATTAATAACTTAAAGACTAAATattaat           <  2:3253421/91‑1 (MQ=255)

                                                                                   gACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATattaatta         >  2:3383581/1‑91 (MQ=255)

                                                                                      aTAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTAttt      >  1:1834018/1‑91 (MQ=255)

                                                                                      aTAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTAttt      <  2:1914216/91‑1 (MQ=255)

                                                                                      aTAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTAttt      <  1:2479779/91‑1 (MQ=255)

                                                                                        aaaaaaGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAg    <  2:1213445/91‑1 (MQ=255)

                                                                                         aaaaaGAAGCAAGCACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAgc   <  2:3293268/91‑1 (MQ=255)

                                                                                          AAAAGAAGCAGACAAAATGGTGTTTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAgcg  <  1:2267692‑M1/91‑1 (MQ=255)

                                                                                          AAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCGTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAgcg  >  2:3047682‑M1/1‑91 (MQ=255)

ATTATATCACAATCAATTTTGATATATTTTACCATTTTTACGCTTTCATTTTAAAATCAAACTGTTTTATTTATTACTTATACGACATAAAAAAGAAGCAAACACCATTTTGTCTGCTTCTTTTAAAATTAATATCCCTACGTTATTAATAACTTAAAGACTAAATATTAATTATTTAGCG  >  USA300TCH1516_ALE/2241652‑2241832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.