| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2388283 = | 137 (0.670) | 17 (0.110) | 9/126 | NT | 13.0% | intergenic (+18/+84) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV |
| ? | USA300TCH1516_ALE | 2388362 = | 121 (0.760) | intergenic (+97/+5) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV | |||||
Only 100 of 344 total aligned reads displayed.
TTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTT > USA300TCH1516_ALE/2388194‑2388373 | tattctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTaa > 2:2389753‑M1/89‑91 (MQ=255) tattctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTaa > 2:2792929‑M1/89‑91 (MQ=255) tattctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTaa > 1:1461400‑M1/89‑91 (MQ=255) gCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGACCTAAATATTTATATTC‑AAAAATAAAA > 2:3041677‑M1/1‑91 (MQ=255) gCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAACATAAAA > 2:2936663‑M1/1‑91 (MQ=255) gCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAA > 1:2096476‑M1/1‑91 (MQ=255) gCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAA > 1:3921542‑M1/1‑91 (MQ=255) gCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAA > 2:1647159‑M1/1‑91 (MQ=255) ttctatttctatagtacttctcaaaagaaatagttagataaaattactaaagaaatagaagtgttaagcgttacaaactcaaaacttacaa < 2:3695825‑M1/5‑4 (MQ=255) cAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAA < 1:1244276‑M1/91‑1 (MQ=255) tctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTaaaaa > 1:489893‑M1/86‑91 (MQ=255) tctatttctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTaaaaa < 1:1534678‑M1/6‑1 (MQ=255) aaTCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAG < 2:616191‑M1/91‑1 (MQ=255) tCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCA < 1:3471907‑M1/91‑1 (MQ=255) ttACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGC > 2:1071493‑M1/1‑91 (MQ=255) tctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGc > 1:1492814‑M1/80‑91 (MQ=255) tACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCC < 2:1126581‑M1/91‑1 (MQ=255) ctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGcc > 1:1731767‑M1/79‑91 (MQ=255) ctatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGcc < 1:3656590‑M1/13‑1 (MQ=255) tatagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCa > 2:3394712‑M1/78‑91 (MQ=255) cTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAA < 2:426230‑M1/91‑1 (MQ=255) tATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAAT > 1:2451086‑M1/1‑91 (MQ=255) atagtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCaa < 2:2280571‑M1/15‑1 (MQ=255) tagtacttctcaaaagaaattgttagataaaattactaaagaaatagacgtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAAt < 2:3581508‑M1/16‑1 (MQ=255) aTGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATC > 2:1521173‑M1/1‑91 (MQ=255) agtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAAtc > 2:3361412‑M1/75‑91 (MQ=255) gtacttctcaaaagaaattgttagataaaattactaaagaaatagaagtgttaagcgttactaactaaaaactTAAAAAGCAtgccactca < 2:873394‑M1/18‑5 (MQ=255) gCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAAtctc < 2:3124776/91‑1 (MQ=255) cTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATctct > 1:1908323/1‑91 (MQ=255) ttACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATtca > 2:2872016/1‑91 (MQ=255) tACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATtcat < 2:716797/91‑1 (MQ=255) tACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATtcat < 1:2387837/91‑1 (MQ=255) aCTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATtcatc > 1:1059427/1‑91 (MQ=255) cttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATtcatca < 2:182273/91‑1 (MQ=255) ttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTATATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTcatcat < 2:3546905/91‑1 (MQ=255) ttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTcatcat < 2:1345244/91‑1 (MQ=255) tcttAATTCCTGGTCGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAAATAAAAAGCATGCCAATCTCTATTcatcat < 1:2037231/91‑1 (MQ=255) tcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTACTCattatt > 2:1218764/1‑91 (MQ=255) tAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgt < 1:929010/91‑1 (MQ=255) tCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgt > 2:19794/1‑91 (MQ=255) tCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgt > 2:2473018/1‑91 (MQ=255) tCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgt > 2:2540761/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:1363277/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:2158152/1‑91 (MQ=255) ggACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTcccc > 1:2549325/1‑91 (MQ=255) gACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCa < 1:3573938/91‑1 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg > 1:2340480/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATCAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 1:3133184/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 2:2021469/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc < 2:2066214/91‑1 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 2:801612/1‑91 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGc < 1:2276389/91‑1 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGc < 1:533691/91‑1 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAAGCTCTATTCATCATTTGTCTGTCCCCAAGACGc < 2:3886118/91‑1 (MQ=255) tGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCa > 2:3959902/1‑91 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATCCATCATTTGTCTGTCCCCAAGACGCaa > 2:900717/1‑91 (MQ=255) tAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAt < 2:2680372/91‑1 (MQ=255) tAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatg < 1:1811988/91‑1 (MQ=255) tAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatg < 1:1776083/91‑1 (MQ=255) aGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatga > 2:2562631/1‑91 (MQ=255) gAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgat < 1:3004058/91‑1 (MQ=255) aaaTGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgatg < 1:3736073/91‑1 (MQ=255) aTGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTa < 1:79903/91‑1 (MQ=255) aTGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTa < 2:2006855/91‑1 (MQ=255) aTGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTa > 2:3329369/1‑91 (MQ=255) gCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt > 2:3658306/1‑91 (MQ=255) gCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt < 1:2360154/91‑1 (MQ=255) gaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt > 1:41989‑M1/30‑91 (MQ=255) ccATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:1954103‑M2/1‑90 (MQ=255) ccATGAACTAAATATTTATATTC‑AAAAATAAAAAGCAAGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATATACTg < 1:3670911‑M2/91‑2 (MQ=255) cATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCACTTGTCTGTCCCCAAGACGCAATTATGATGTACTga < 1:1898097‑M2/91‑3 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:628504‑M1/29‑91 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:2185389‑M1/29‑91 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:166916‑M1/29‑91 (MQ=255) aTGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgat > 1:542816‑M2/1‑88 (MQ=255) gAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattg < 2:2663046‑M1/91‑51 (MQ=255) gAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattg < 1:1006693‑M1/91‑51 (MQ=255) gAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg > 2:2879875‑M2/1‑86 (MQ=255) aaCTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattgg < 1:1752027‑M1/91‑52 (MQ=255) aaCTAAATATTTATATTC‑AAAAATAAAAAGCAAGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattgg < 1:3357425‑M1/91‑52 (MQ=255) aCTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggc < 1:1186881‑M2/91‑8 (MQ=255) cTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCagtacatcatagttgcgtcttggggacagacaaatgatgaatagagattggca < 2:65588‑M1/91‑54 (MQ=255) tAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:3763630‑M1/91‑55 (MQ=255) tAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat > 1:1595537‑M2/1‑82 (MQ=255) agcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCAt > 2:2451339‑M1/21‑91 (MQ=255) aaaTATCTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg < 2:2151128‑M2/91‑11 (MQ=255) atatTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGCCGCAATTATGCTGTACTgattggcatgct < 2:361395‑M2/91‑13 (MQ=255) atatTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgct < 2:1250965‑M2/91‑13 (MQ=255) atTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGCTGTACTgcttggcatgcttt < 2:3804312‑M2/91‑15 (MQ=255) atTTAAATTC‑AAACATAAAAAGCATGCCATTCTCTATTCACCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt > 2:1659042‑M2/1‑77 (MQ=255) ttATATTC‑AAAAATAAAAAGCATGCCGATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttt > 2:528827‑M2/1‑75 (MQ=255) ttATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttt > 1:2922951‑M2/1‑75 (MQ=255) tataTTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttta < 1:1996992‑M2/91‑18 (MQ=255) ttC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTATTGATTGGCATGCTTTTTAAGtt > 2:3193052/1‑91 (MQ=255) tC‑AAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttattttt < 1:605216‑M1/91‑68 (MQ=255) aaaaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTa > 2:2402821/1‑91 (MQ=255) aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt < 2:503482/91‑1 (MQ=255) aTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGtt < 2:676894/91‑1 (MQ=255) tAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatata < 2:1586701‑M1/91‑75 (MQ=255) TAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGttt < 1:2718551‑M1/91‑1 (MQ=255) | TTAGCAATCATTACTATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTC‑AAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTT > USA300TCH1516_ALE/2388194‑2388373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |