New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2399023 =212 (1.040)23 (0.140) 11/134 NT 12.8% intergenic (+97/+75) fdhD/USA300HOU_RS12350 Sulfurtransferase FdhD/hypothetical protein
?USA300TCH1516_ALE 2399070 = 137 (0.800)intergenic (+144/+28) fdhD/USA300HOU_RS12350 Sulfurtransferase FdhD/hypothetical protein

Only 100 of 304 total aligned reads displayed.

CATTATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCT  >  USA300TCH1516_ALE/2398933‑2399113
                                                                                          |                                                                                          
cATTATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTa                                                                                            >  1:2153682/1‑91 (MQ=255)
cATTATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTa                                                                                            >  2:1171100/1‑91 (MQ=255)
agcaaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataa                                                                                            <  2:2641885‑M1/1‑1 (MQ=255)
agcaaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataa                                                                                            <  1:1564845‑M1/1‑1 (MQ=255)
 gcaaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaa                                                                                           >  2:2278238‑M1/90‑91 (MQ=255)
 gcaaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaa                                                                                           <  1:2310938‑M1/2‑1 (MQ=255)
 gcaaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaa                                                                                           <  2:1041514‑M1/2‑1 (MQ=255)
  ttATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTaaa                                                                                          >  2:1591347/1‑91 (MQ=255)
  ttATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTaaa                                                                                          <  2:3306980/91‑1 (MQ=255)
   aaggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaaaa                                                                                         >  1:529523‑M1/88‑91 (MQ=255)
    ataGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTaaaaa                                                                                        <  2:2192687/91‑1 (MQ=255)
    aggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaaaaa                                                                                        <  1:657701‑M1/5‑1 (MQ=255)
    aggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataaaaaa                                                                                        <  2:2423194‑M1/5‑1 (MQ=255)
     taGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAg                                                                                       <  1:1445230/91‑1 (MQ=255)
     ggttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAg                                                                                       >  2:3758318‑M1/86‑91 (MQ=255)
      tttatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGc                                                                                      >  1:756680‑M1/85‑91 (MQ=255)
      gttatgtctatccatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGc                                                                                      <  1:3054534‑M1/7‑1 (MQ=255)
      aGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGc                                                                                      >  1:909592/1‑91 (MQ=255)
       gtgtgtCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCa                                                                                     <  2:518040/91‑1 (MQ=255)
        tatgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaagaAAAAAGCAg                                                                                    <  2:1191588‑M1/9‑1 (MQ=255)
         atgtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGt                                                                                   <  2:477700‑M1/10‑1 (MQ=255)
          tgtCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATTAGTAGCTCAAAACAATTTAAAAAGCAGTa                                                                                  >  2:874643/1‑91 (MQ=255)
          tgtCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTa                                                                                  >  2:2362394/1‑91 (MQ=255)
          tgtCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTa                                                                                  >  2:1417108/1‑91 (MQ=255)
          tgtCATAATGAACGATATTCCACATGAATCAACAATTTAAACGCACTATCTTTATAAGTCTAAGTAGCTCAACACAATTTACAAAGCCGTa                                                                                  >  2:2362018/1‑91 (MQ=255)
          ggtctatcaatcgttttgttagcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTa                                                                                  >  2:424259‑M1/81‑91 (MQ=255)
           gtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTaa                                                                                 <  1:1614199‑M1/12‑1 (MQ=255)
           gtctatcaatcgttttgttatcaaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTaa                                                                                 <  2:1642168‑M1/12‑1 (MQ=255)
             cATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGt                                                                               <  2:3041498/91‑1 (MQ=255)
              aTAACGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGtt                                                                              <  1:3290015/91‑1 (MQ=255)
                  tGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGAtt                                                                          >  2:2456449/1‑91 (MQ=255)
                   gAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGAttt                                                                         >  2:2077136/1‑91 (MQ=255)
                    aaCGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTc                                                                        >  1:1641350/1‑91 (MQ=255)
                     aCGATATTCTACATGAATCAACAAGTTAAACGCACTATTTTTATAAGTATTAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCt                                                                       <  2:3662894/91‑1 (MQ=255)
                      cGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTa                                                                      >  1:1862811/1‑91 (MQ=255)
                       gATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTAc                                                                     <  1:1878798/91‑1 (MQ=255)
                        atatTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACt                                                                    <  1:147103/91‑1 (MQ=255)
                         ttgttatcaaatattaaaagaagatattggaaactaacgattgatgataggtttgtattcgaataAAAAAGCAGTAAGTTGATTTCTACTc                                                                   >  1:3510815‑M1/66‑91 (MQ=255)
                          atTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCg                                                                  <  2:3215664/91‑1 (MQ=255)
                          atTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCg                                                                  <  2:1572276/91‑1 (MQ=255)
                          atTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCg                                                                  >  1:2452355/1‑91 (MQ=255)
                            tCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGaa                                                                <  2:186190/91‑1 (MQ=255)
                             cTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGaaa                                                               <  1:2364251/91‑1 (MQ=255)
                             cTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGaaa                                                               >  2:2664427/1‑91 (MQ=255)
                               tcaaatattaaaagaagatattgaagattaacgattgatgatatgtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAAcc                                                             >  2:16829‑M1/60‑91 (MQ=255)
                               aCATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAAcc                                                             >  1:3771636/1‑91 (MQ=255)
                               aCATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAAcc                                                             <  1:3251773/91‑1 (MQ=255)
                                 aaatattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAg                                                           >  1:1082565‑M1/58‑91 (MQ=255)
                                 aTGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAg                                                           <  2:3714848/91‑1 (MQ=255)
                                 aTGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAg                                                           <  2:3715373/91‑1 (MQ=255)
                                   gAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCt                                                         <  2:3608559/91‑1 (MQ=255)
                                   gAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCt                                                         <  2:623536/91‑1 (MQ=255)
                                    tattaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCtt                                                        >  1:956259‑M1/55‑91 (MQ=255)
                                    aaTCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCtt                                                        <  1:2259470/91‑1 (MQ=255)
                                    aaTCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCtt                                                        <  2:2335339/91‑1 (MQ=255)
                                     atttaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTa                                                       >  1:3843571‑M1/54‑91 (MQ=255)
                                     attaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTa                                                       >  1:1786658‑M1/54‑91 (MQ=255)
                                     attaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTa                                                       >  1:3636911‑M1/54‑91 (MQ=255)
                                     attaaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTa                                                       >  1:2567028‑M1/54‑91 (MQ=255)
                                      tCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTAc                                                      <  1:372468/91‑1 (MQ=255)
                                       caacaaTTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACt                                                     >  2:2894448/1‑91 (MQ=255)
                                        aaaagaagatattggaaattaacgattgatgataggtttgtattagaataAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTg                                                    >  2:1249564‑M1/51‑91 (MQ=255)
                                         acaaTTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAACGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGc                                                   <  1:3340543/91‑1 (MQ=255)
                                          caaTTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCt                                                  <  2:2712181/91‑1 (MQ=255)
                                          caaTTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCt                                                  <  1:1285015/91‑1 (MQ=17)
                                             tttAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCtttt                                               >  1:3913839/1‑91 (MQ=255)
                                             tatAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCtttt                                               <  1:3268112/89‑1 (MQ=255)
                                              ttAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGGTTTCGAGTAGAAATCAACTTACTGCttttt                                              <  1:2519079/91‑1 (MQ=18)
                                              ttAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCttttt                                              <  2:1116167/91‑1 (MQ=255)
                                                 aaCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTCAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTAt                                           >  2:72521/1‑91 (MQ=255)
                                                  aCGCACTATTTTTATAAGTATAAGTAGCTCATAACAATTTAAAAGGCAGTAAGTTGACTTCTACTCGAAACCAGCTTACTGCTTTTTTAtt                                          <  1:3158203/91‑1 (MQ=255)
                                                  aCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTAtt                                          >  1:799041/1‑91 (MQ=255)
                                                  aCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTAtt                                          >  1:2323239/1‑91 (MQ=255)
                                                    gCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                        <  1:815195/91‑1 (MQ=255)
                                                    gCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                        <  1:3857288/91‑1 (MQ=255)
                                                    gCACTATTTTTATAAATATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                        >  1:3371755/1‑91 (MQ=255)
                                                       cTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAAt                                     >  1:1204226/1‑91 (MQ=255)
                                                           ttttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACaa                                 >  2:126019/1‑91 (MQ=255)
                                                            tttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACaaa                                >  1:1377563/1‑91 (MQ=255)
                                                            tttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATCCTAATACaaa                                >  2:596148/1‑91 (MQ=255)
                                                             ttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAAc                               >  1:3505510/1‑91 (MQ=255)
                                                             ttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAAc                               >  2:2843693/1‑91 (MQ=255)
                                                                  agtataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTatc                          >  2:2585984/1‑91 (MQ=255)
                                                                      taagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTATTACTAACCTAtcatca                      >  2:2972270/1‑91 (MQ=255)
                                                                         gtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATc                   <  2:3406919/91‑1 (MQ=255)
                                                                            gCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGtt                <  1:3585497/91‑1 (MQ=255)
                                                                            gCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGtt                >  2:1588000/1‑91 (MQ=255)
                                                                            gCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGtt                >  1:213421/1‑91 (MQ=255)
                                                                               cAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAt             <  2:3827839/91‑1 (MQ=255)
                                                                                aaaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAtt            >  2:1460977/1‑91 (MQ=255)
                                                                                aaaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAtt            <  1:485758/91‑1 (MQ=255)
                                                                                  aaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTc          <  2:3129675/91‑1 (MQ=255)
                                                                                  aaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTc          >  2:2880348/1‑91 (MQ=255)
                                                                                   aCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTGAATTTcc         >  2:3520245/1‑91 (MQ=255)
                                                                                      aTTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAat      <  1:289208/91‑1 (MQ=255)
                                                                                      aTTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAat      <  1:2056176/91‑1 (MQ=255)
                                                                                       tttAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAata     >  1:2731536/1‑91 (MQ=255)
                                                                                        ttAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAatat    <  2:1530219/91‑1 (MQ=255)
                                                                                         tAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtc   >  2:2140576/1‑91 (MQ=255)
                                                                                          AAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtct  >  1:2096126‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
CATTATAGTGTGTCATAATGAACGATATTCTACATGAATCAACAATTTAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCT  >  USA300TCH1516_ALE/2398933‑2399113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.