BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2399023 =	212 (1.040)	23 (0.140)	11/134	NT	12.8%	intergenic (+97/+75)	fdhD/USA300HOU_RS12350	Sulfurtransferase FdhD/hypothetical protein
*	?	USA300TCH1516_ALE	2399070 =	137 (0.800)	23 (0.140)	11/134	NT	12.8%	intergenic (+144/+28)	fdhD/USA300HOU_RS12350	Sulfurtransferase FdhD/hypothetical protein

Only 100 of 257 total aligned reads displayed.

TAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGCTT  >  USA300TCH1516_ALE/2398980‑2399160

 aaaCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTa                                                                                           <  2:342397/91‑1 (MQ=255)

  aaCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTAt                                                                                          >  2:92240/1‑91 (MQ=255)

   aCGCACTATTTTTATAAGTATAAGTAGCTCATAACAATTTAAAAGGCAGTAAGTTGACTTCTACTCGAAACCAGCTTACTGCTTTTTTAtt                                                                                         <  1:3158203/91‑1 (MQ=255)

   aCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTAtt                                                                                         >  1:799041/1‑91 (MQ=255)

   aCGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTCCTGTCTTAtt                                                                                         >  2:2698779/1‑91 (MQ=255)

     gCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                                                                       >  1:3212422/1‑91 (MQ=255)

     gCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                                                                       <  1:3857288/91‑1 (MQ=255)

     gCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTAGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                                                                       <  1:815415/91‑1 (MQ=255)

     gCACTATTTTTATAAATATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCt                                                                                       >  1:3371755/1‑91 (MQ=255)

       aCTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTaa                                                                                     <  2:213080/91‑1 (MQ=255)

        cTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAAt                                                                                    >  1:1204226/1‑91 (MQ=255)

           tttttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACa                                                                                 <  2:1663520/91‑1 (MQ=255)

             tttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACaaa                                                                               >  1:1377563/1‑91 (MQ=255)

             tttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATCCTAATACaaa                                                                               >  2:596148/1‑91 (MQ=255)

              ttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAAc                                                                              >  1:3505819/1‑91 (MQ=255)

              ttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAAc                                                                              >  1:1467714/1‑91 (MQ=255)

              ttATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAAc                                                                              >  2:2843693/1‑91 (MQ=255)

                ataagtataagtAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCt                                                                            >  2:294311/1‑91 (MQ=255)

                 taagtataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTa                                                                           >  1:32980/1‑91 (MQ=255)

                 taagtataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTa                                                                           <  2:1076395/91‑1 (MQ=255)

                   agtataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTatc                                                                         >  1:2894569/1‑91 (MQ=255)

                   agtataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTatc                                                                         >  1:2614079/1‑91 (MQ=255)

                     tataagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTatcat                                                                       >  1:561153/1‑91 (MQ=255)

                       taagtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTAtcatca                                                                     <  2:1244995/91‑1 (MQ=255)

                         agtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAAt                                                                   >  1:2626071/1‑91 (MQ=255)

                          gtaGCTCAAAATAATTTAAAAAGGAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCGTTTTTATTCTAATACAAACCTATCATCAATc                                                                  <  2:3022939/91‑1 (MQ=255)

                          gtaGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATc                                                                  <  1:3829695/91‑1 (MQ=255)

                            aGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGt                                                                <  2:1337499/91‑1 (MQ=255)

                             gCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGtt                                                               >  1:2333287/1‑91 (MQ=255)

                             gCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGtt                                                               >  2:1588168/1‑91 (MQ=255)

                              cTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTa                                                              >  2:2889028/1‑91 (MQ=255)

                                cAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAt                                                            <  2:3827839/91‑1 (MQ=255)

                                 aaaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAtt                                                           >  1:2461413/1‑91 (MQ=255)

                                 aaaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAtt                                                           >  2:1460977/1‑91 (MQ=255)

                                 aaaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAtt                                                           <  1:485758/91‑1 (MQ=255)

                                  aaaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAAttt                                                          >  2:2167569/1‑91 (MQ=255)

                                   aaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCACTCGTTAATTTc                                                         >  2:2880290/1‑91 (MQ=255)

                                   aaCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTc                                                         >  1:2999772/1‑91 (MQ=255)

                                    aCAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAACCCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTcc                                                        <  2:3605659/91‑1 (MQ=255)

                                       aTTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAat                                                     <  1:2056176/91‑1 (MQ=255)

                                         ttAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAatat                                                   >  2:3248293/1‑91 (MQ=255)

                                         ttAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAatat                                                   >  2:1650961/1‑91 (MQ=255)

                                         ttAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAatat                                                   >  1:150790/1‑91 (MQ=255)

                                          tAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtc                                                  >  2:1251940/1‑91 (MQ=255)

                                          tAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtc                                                  >  2:607000/1‑91 (MQ=255)

                                            AAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtctt                                                <  1:2380964‑M1/91‑1 (MQ=255)

                                             AAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtcttc                                               >  2:3475212‑M1/1‑91 (MQ=255)

                                             AAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAtcttc                                               <  2:2080680‑M1/91‑1 (MQ=255)

                                                gcagtaagctggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCttt                                            >  1:3555437‑M2/43‑91 (MQ=255)

                                                gcagtaagctggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCttt                                            >  1:1333078‑M2/43‑91 (MQ=255)

                                                 CAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCtttt                                           >  2:2500284‑M1/1‑91 (MQ=255)

                                                  agtaagctggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTa                                          >  1:214806‑M2/41‑91 (MQ=255)

                                                  AGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTa                                          >  1:3466432‑M1/1‑91 (MQ=255)

                                                    taagctggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAat                                        >  1:3636911‑M2/39‑91 (MQ=255)

                                                    TAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAat                                        >  1:999368‑M1/1‑91 (MQ=255)

                                                    TAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAat                                        >  1:1000061‑M1/1‑91 (MQ=255)

                                                    TAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAat                                        <  2:687624‑M1/91‑1 (MQ=255)

                                                     AAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTAAATTTCCAATATCTTCTTTTAata                                       <  2:3678970‑M1/91‑1 (MQ=255)

                                                        ctggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATAttt                                    >  1:1082565‑M2/35‑91 (MQ=255)

                                                         tggtttcgagtagaaatcaacttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTg                                   >  1:2522768‑M2/34‑91 (MQ=255)

                                                         tGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTg                                   >  1:1748711/1‑91 (MQ=255)

                                                         tGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTg                                   <  1:1806912/91‑1 (MQ=255)

                                                         tGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTg                                   <  1:1254442/91‑1 (MQ=255)

                                                         tGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTg                                   <  2:1818154/91‑1 (MQ=255)

                                                           gtttcgagtagaaatcaacttactgctttttTTTTCTTATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTATTATTTGAt                                 >  2:1512464‑M2/32‑91 (MQ=255)

                                                             ttCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATaa                               >  1:2070870/1‑91 (MQ=255)

                                                              tCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAAc                              <  2:2397892/91‑1 (MQ=255)

                                                              tCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAAc                              <  2:773994/91‑1 (MQ=255)

                                                                 aCTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACaaa                           <  1:750764/91‑1 (MQ=255)

                                                                  cTCGAAATCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCGATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACaaaa                          <  1:1965558/91‑1 (MQ=255)

                                                                  cTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATTTTTGATAACacaa                          >  2:3181463/1‑91 (MQ=255)

                                                                   tCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAAc                         <  2:1530802/91‑1 (MQ=255)

                                                                    cGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACg                        >  1:767233/1‑91 (MQ=255)

                                                                    cGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACg                        >  2:2767522/1‑91 (MQ=255)

                                                                    cGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACg                        >  1:269214/1‑91 (MQ=255)

                                                                     gAAACCAGCTTACTGCTTTTTTATTTTATTTCAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGa                       >  2:2990790/1‑91 (MQ=255)

                                                                     gAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGa                       >  2:427205/1‑91 (MQ=255)

                                                                     gAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGa                       <  1:3627262/91‑1 (MQ=255)

                                                                      aaaCCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGAt                      <  2:1144203/91‑1 (MQ=255)

                                                                       aaCCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGAtt                     >  2:1841535/1‑91 (MQ=255)

                                                                         ccAGCTTACTGCTTTTTTTTTTTTTTTCAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTgt                   >  2:369239/1‑90 (MQ=255)

                                                                         ccAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGa                   <  1:1837566/91‑1 (MQ=255)

                                                                         ccAGCTTACTGCGTTTTTATTCTAATACAAACCTAGCATCAATCGTTAATTTCCAATATCTTCTGTGGATATTTTATAACAAAACGATTGa                   <  1:2131229/91‑1 (MQ=255)

                                                                           aGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATa                 >  2:102324/1‑91 (MQ=255)

                                                                            gCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAg                <  2:844432/91‑1 (MQ=255)

                                                                            gCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAg                <  1:2813936/91‑1 (MQ=255)

                                                                            gCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAg                >  2:677253/1‑91 (MQ=255)

                                                                            gCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAg                >  2:3808631/1‑91 (MQ=255)

                                                                             cttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGa               >  1:2206078‑M2/14‑91 (MQ=255)

                                                                              ttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGAc              <  1:373314‑M2/79‑1 (MQ=255)

                                                                              ttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGAc              <  1:1614199‑M2/79‑1 (MQ=255)

                                                                               tactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACa             <  1:427877‑M2/80‑1 (MQ=255)

                                                                                 ctgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTATTTTAATATTTGATAACAAAACGATTGATAGACatg           >  2:3923775‑M2/10‑90 (MQ=255)

                                                                                   gctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAAc         <  2:11782‑M2/84‑1 (MQ=255)

                                                                                   gctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATGGATAGACATAAc         <  1:3054534‑M2/84‑1 (MQ=255)

                                                                                     tttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCt       <  1:657701‑M2/86‑1 (MQ=255)

                                                                                        ttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGc    <  2:501648‑M2/89‑1 (MQ=255)

                                                                                        ttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGc    >  2:2278238‑M2/3‑91 (MQ=255)

                                                                                        ttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGc    <  1:2310938‑M2/89‑1 (MQ=255)

                                                                                         tTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGCt   <  2:2641885‑M2/90‑1 (MQ=255)

TAAACGCACTATTTTTATAAGTATAAGTAGCTCAAAACAATTTAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTGCTT  >  USA300TCH1516_ALE/2398980‑2399160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.