New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2492466 =142 (0.700)25 (0.140) 13/138 NT 18.6% intergenic (+9/+37) yhfP/rimI_4 Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase
?USA300TCH1516_ALE 2492499 = 96 (0.550)intergenic (+42/+4) yhfP/rimI_4 Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase

Only 100 of 252 total aligned reads displayed.

TGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAA  >  USA300TCH1516_ALE/2492376‑2492556
                                                                                          |                                                                                          
cagactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaa                                                                                            <  2:3266276‑M1/1‑1 (MQ=255)
 agactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaa                                                                                           <  2:3950276‑M1/2‑1 (MQ=255)
 agactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaa                                                                                           <  1:3437399‑M1/2‑1 (MQ=255)
  gactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaa                                                                                          <  1:1020134‑M1/3‑1 (MQ=255)
  gactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaa                                                                                          >  1:1238490‑M1/89‑91 (MQ=255)
  aactacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaa                                                                                          >  2:2373558‑M1/89‑91 (MQ=255)
   actacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaaa                                                                                         <  2:2410546‑M1/4‑1 (MQ=255)
   aCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGaaaa                                                                                         >  1:1124639/1‑91 (MQ=255)
   aCTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGaaaa                                                                                         >  2:155560/1‑91 (MQ=255)
    ctacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaaaa                                                                                        <  1:3168421‑M1/5‑1 (MQ=255)
    ctacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaaaa                                                                                        <  2:226656‑M1/5‑1 (MQ=255)
    ctacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaaaa                                                                                        >  1:2645371‑M1/87‑91 (MQ=255)
    ctacccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaaaaaa                                                                                        <  1:3210222‑M1/5‑1 (MQ=255)
    cTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGtaaag                                                                                        >  1:504472/1‑90 (MQ=255)
    cTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGCCGCATTGTTATCGATTTCGGTGTAGATAAATAGAAATCATGaaaaa                                                                                        >  2:1258978/1‑91 (MQ=255)
     ttCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAg                                                                                       <  1:2331179/91‑1 (MQ=255)
      tCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGa                                                                                      <  1:1838390/91‑1 (MQ=255)
      tCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGa                                                                                      <  2:1737067/91‑1 (MQ=255)
      acccagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGa                                                                                      <  1:1406617‑M1/7‑1 (MQ=255)
       ccAGAACAACTTAACAAAGTAATTAAACATGAAAATAAATGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGAc                                                                                     >  1:2410546/1‑91 (MQ=255)
       ccAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGAc                                                                                     >  1:2159332/1‑91 (MQ=255)
        cAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACa                                                                                    >  2:1179940/1‑91 (MQ=255)
         cagcggataaattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACAt                                                                                   <  1:2055819‑M1/10‑1 (MQ=255)
          gAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATc                                                                                  >  2:3022932/1‑91 (MQ=255)
           aacaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATcc                                                                                 <  2:1626203/91‑1 (MQ=255)
           aacaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATcc                                                                                 >  2:3713715/1‑91 (MQ=255)
           aacaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATcc                                                                                 <  1:2318390/91‑1 (MQ=255)
            acaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATccc                                                                                <  2:1814330/91‑1 (MQ=255)
            acaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATccc                                                                                <  1:689430/91‑1 (MQ=255)
            acaacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATccc                                                                                >  1:2574298/1‑91 (MQ=255)
              aacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGt                                                                              >  2:3590850/1‑91 (MQ=255)
              aacTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGt                                                                              >  2:3590824/1‑91 (MQ=255)
               acTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGtt                                                                             <  2:1867760/91‑1 (MQ=255)
               acTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGtt                                                                             >  1:3744228/1‑91 (MQ=255)
                  aattatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATg                                                                          >  2:538670‑M1/73‑91 (MQ=255)
                   attatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaaataAAAAAGACATCCCGTTATGc                                                                         >  2:1684012‑M1/72‑91 (MQ=255)
                    ttatatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCg                                                                        >  1:1906555‑M1/71‑91 (MQ=255)
                    aCAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCg                                                                        <  1:3332743/91‑1 (MQ=255)
                      atatacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCgag                                                                      >  1:1614122‑M1/69‑91 (MQ=255)
                      atatacaaaagttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCgag                                                                      >  2:2831391‑M1/69‑91 (MQ=255)
                      aaaGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCgag                                                                      <  2:209819/91‑1 (MQ=255)
                       aaGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGATATGCgaga                                                                     >  2:1051420/1‑91 (MQ=255)
                        atacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGAt                                                                    >  1:72081‑M1/67‑91 (MQ=255)
                         tacaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATg                                                                   >  2:2488780‑M1/66‑91 (MQ=255)
                          gaaTTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGt                                                                  <  2:3869910/90‑1 (MQ=255)
                          acaaaatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGt                                                                  >  1:566638‑M1/65‑91 (MQ=255)
                            aTTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCt                                                                <  2:2569025/91‑1 (MQ=255)
                              aatttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGTCttt                                                              >  1:1047472‑M1/61‑91 (MQ=255)
                               atttggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGTCtttt                                                             >  1:2702315‑M1/60‑91 (MQ=255)
                               aaaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttt                                                             >  2:3805342/1‑91 (MQ=255)
                                aaCATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCTCGTTATGCGAGATGTCttttt                                                            >  2:934610/1‑91 (MQ=255)
                                 aCATGGAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt                                                           <  2:3201706/91‑1 (MQ=255)
                                  cATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTa                                                          >  2:2978974/1‑91 (MQ=255)
                                   ggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTaa                                                         >  1:1058789‑M1/56‑91 (MQ=255)
                                    tGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAt                                                        <  1:80669/91‑1 (MQ=255)
                                     gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt                                                       >  2:1927831/1‑91 (MQ=255)
                                       aaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTa                                                     <  1:2694143/91‑1 (MQ=255)
                                       aaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTa                                                     <  1:835721/91‑1 (MQ=255)
                                         aTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt                                                   >  1:1916769/1‑91 (MQ=255)
                                          tAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTa                                                  <  1:3013660/91‑1 (MQ=255)
                                           aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAt                                                 <  1:391622/91‑1 (MQ=255)
                                           aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAt                                                 <  1:516638/91‑1 (MQ=255)
                                            aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt                                                >  1:1508340/1‑91 (MQ=255)
                                             aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAttt                                               >  2:1156000/1‑91 (MQ=255)
                                              gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg                                              >  1:2499937/1‑91 (MQ=255)
                                              gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg                                              >  2:3165279/1‑91 (MQ=255)
                                                gcgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGCTGTCTTTTTTAATTTAGTATTTGAT                                            >  1:3685045‑M1/1‑91 (MQ=255)
                                                gcgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAT                                            <  1:3735244‑M1/91‑1 (MQ=255)
                                                gcgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAT                                            >  2:2311768‑M1/1‑91 (MQ=255)
                                                 cgcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATA                                           >  2:3840304‑M1/1‑91 (MQ=255)
                                                  gcATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATAT                                          <  1:1537203‑M1/91‑1 (MQ=255)
                                                   cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATA                                         <  2:3375009‑M1/91‑1 (MQ=255)
                                                   cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATA                                         <  2:221577‑M1/91‑1 (MQ=255)
                                                    aTTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATAC                                        <  1:608014‑M1/91‑1 (MQ=255)
                                                    aTTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTAGATATAC                                        >  2:3518596‑M1/1‑91 (MQ=255)
                                                       gTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatacata                                     >  1:2823625/1‑91 (MQ=255)
                                                            cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc                                <  2:2937286/91‑1 (MQ=255)
                                                            cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc                                >  1:350827/1‑91 (MQ=255)
                                                            cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc                                <  2:678715/91‑1 (MQ=255)
                                                               tttCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGa                             <  2:2226959/91‑1 (MQ=255)
                                                                 tCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAAt                           >  1:1729381/1‑91 (MQ=255)
                                                                  cGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGaagc                          <  2:670782/91‑3 (MQ=255)
                                                                  cGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATc                          <  2:2601875/91‑1 (MQ=255)
                                                                  cGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATc                          <  1:3549791/91‑1 (MQ=255)
                                                                    gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                        <  1:2527171/91‑1 (MQ=255)
                                                                    gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg                        >  1:2714215/1‑91 (MQ=255)
                                                                     tgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTgg                       >  2:1407050/1‑91 (MQ=255)
                                                                     tgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTgg                       >  1:1384651/1‑91 (MQ=255)
                                                                       tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt                     >  1:2366300/1‑91 (MQ=255)
                                                                        aGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTc                    >  2:572464/1‑91 (MQ=255)
                                                                            aaaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggta                >  2:418669/1‑91 (MQ=255)
                                                                                aGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgta            <  2:1961474‑M2/91‑4 (MQ=255)
                                                                                 gTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgtat           <  2:3342125‑M2/91‑5 (MQ=255)
                                                                                  tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACctaccgaaccagattcaggcggtatgtata          <  2:588265‑M1/91‑31 (MQ=255)
                                                                                  tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgtata          <  1:951475‑M2/91‑6 (MQ=255)
                                                                                     tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt       <  2:3719745/91‑1 (MQ=255)
                                                                                     tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt       <  1:1284831/91‑1 (MQ=255)
                                                                                      cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACctaccgaaccagattcaggcggtatgtatatcaa      <  1:1630206‑M1/91‑35 (MQ=255)
                                                                                      cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc      <  2:2015319/91‑1 (MQ=255)
                                                                                       gtGAAAGGGACGTCGCGTCACGCGAGATGTCTTTTGTAATTTAGTATGTGAGAGACATACCGCCTGAAGCTGGTTCGGTAGGTATAAAGcc     <  2:1324354/90‑1 (MQ=255)
                                                                                          |                                                                                          
TGAACTTCCAGAACAACTTAACAAAGTAATTAAACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAA  >  USA300TCH1516_ALE/2492376‑2492556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.