| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2492466 = | 142 (0.700) | 25 (0.140) | 13/138 | NT | 18.6% | intergenic (+9/+37) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase |
| ? | USA300TCH1516_ALE | 2492499 = | 96 (0.550) | intergenic (+42/+4) | yhfP/rimI_4 | Putative quinone oxidoreductase YhfP/Ribosomal‑protein‑alanine acetyltransferase | |||||
Only 100 of 221 total aligned reads displayed.
ACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGC > USA300TCH1516_ALE/2492409‑2492589 | ttggatttagacctaccgaaccagatgcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGTCtttttt > 2:2234197‑M1/58‑91 (MQ=255)aCATGGAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCtttttt < 2:3201706/91‑1 (MQ=255) ggatttatacctaccgaaccagattcaggcggtatgtatatcaaatactaaattaAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTaa > 1:1058789‑M1/56‑91 (MQ=255) gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt < 1:736841/91‑1 (MQ=255) gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt > 2:1927831/1‑91 (MQ=255) gAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAtt < 1:2491116/91‑1 (MQ=255) aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt < 2:2270081/91‑1 (MQ=255) aaaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAAttt < 1:1645680/91‑1 (MQ=255) aaaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTa < 1:2694143/91‑1 (MQ=255) aaTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAg > 1:188650/1‑91 (MQ=255) aTAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGt > 2:752060/1‑91 (MQ=255) tAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTa < 1:3013660/91‑1 (MQ=255) aaaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAt < 1:391622/91‑1 (MQ=255) aaGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAtt > 1:1508340/1‑91 (MQ=255) aGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTAttt > 1:3639516/1‑91 (MQ=255) gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg > 1:2499937/1‑91 (MQ=255) gggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTg > 2:3165279/1‑91 (MQ=255) ggCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGa > 1:1407821/1‑91 (MQ=255) gcgcATTGTTATCGATTTCGGTGTAGATAAATACTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGAT < 1:3507267‑M1/91‑1 (MQ=255) cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATA < 2:221577‑M1/91‑1 (MQ=255) cATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATA < 1:1784690‑M1/91‑1 (MQ=255) aTTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATAC < 1:608014‑M1/91‑1 (MQ=255) gTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatacata > 1:2823625/1‑91 (MQ=255) ttATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATatacatac > 2:2125340/1‑91 (MQ=255) aTCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCg < 1:887622/91‑1 (MQ=255) cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc < 2:1776109/91‑1 (MQ=255) cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc < 2:678715/91‑1 (MQ=255) cGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGcc > 1:350827/1‑91 (MQ=255) gATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCt > 1:1932964/1‑91 (MQ=255) gATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCt > 1:1283300/1‑91 (MQ=255) aTTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTg < 1:1181059/91‑1 (MQ=255) cGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGaagc < 2:670782/91‑3 (MQ=255) gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg < 1:1600368/91‑1 (MQ=255) gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg > 1:2714215/1‑91 (MQ=255) gtgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTg < 1:2527171/91‑1 (MQ=255) tgtAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTgg > 1:1384651/1‑91 (MQ=255) tAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGtt > 1:2366663/1‑91 (MQ=255) aGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTc > 2:572464/1‑91 (MQ=255) aaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtag < 2:2258230/91‑1 (MQ=255) aaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtag < 2:1628433/91‑1 (MQ=255) aaTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCggtag < 2:37261/91‑1 (MQ=255) aTAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGg < 2:2318968‑M2/91‑2 (MQ=255) tAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgt < 1:812485‑M2/91‑3 (MQ=255) aGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgta < 2:1961515‑M2/91‑4 (MQ=255) gTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACctaccgaaccagattcaggcggtatgtat < 2:3718075‑M1/91‑30 (MQ=255) tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgtata < 1:951475‑M2/91‑6 (MQ=255) tATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGgtata > 1:2170416‑M2/1‑86 (MQ=255) gtCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATaaa < 2:2585170/90‑1 (MQ=255) tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAAt < 1:511895/91‑1 (MQ=255) tCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACAGACCGCCTGAATCTGGTTCGGTAGGTATAAAt < 2:3016446/91‑1 (MQ=255) cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACctaccgaaccagattcaggcggtatgtatatcaa < 1:1630083‑M1/91‑35 (MQ=255) cATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATc < 2:2015319/91‑1 (MQ=255) gtGAAAGGGACGTCGCGTCACGCGAGATGTCTTTTGTAATTTAGTATGTGAGAGACATACCGCCTGAAGCTGGTTCGGTAGGTATAAAGcc < 2:1324354/90‑1 (MQ=255) AAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCaaa < 2:2957918‑M1/91‑1 (MQ=255) aaaagacatctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAt > 1:2702315‑M2/33‑91 (MQ=255) AAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtt > 2:339294‑M1/1‑91 (MQ=255) AGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAAtttt < 2:482119‑M1/91‑1 (MQ=255) acatctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt > 1:566638‑M2/28‑91 (MQ=255) ACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt < 2:1888206‑M1/91‑1 (MQ=255) ACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt < 1:201838‑M1/91‑1 (MQ=255) ACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt > 1:309139‑M1/1‑91 (MQ=255) ACATCCCATTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATAACGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGt > 2:592911‑M1/1‑91 (MQ=255) catctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGta > 2:2488780‑M2/27‑91 (MQ=255) aTCCCGTTATGCGAGATGTCATTTTTAATTTAGAATTTGATACACATCCTTCCTGAATCTGGTCCGGAAGGTATAAATTCAAATTTTCtat > 2:1241838/1‑91 (MQ=255) ATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCCACTTTTGtat < 2:3693948‑M1/91‑1 (MQ=255) ATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtat < 2:1088166‑M1/91‑1 (MQ=255) tctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata > 1:1286434‑M2/25‑91 (MQ=255) tctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtata > 2:3096408‑M2/25‑91 (MQ=255) TCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGATAGGTATAAATCCAAATTTTGtata < 1:3682016‑M1/91‑1 (MQ=255) ctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAACTTTTGtatat > 2:2831391‑M2/24‑91 (MQ=255) ctcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtatat > 2:2784415‑M2/24‑91 (MQ=255) CCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtatat > 2:1912321‑M1/1‑91 (MQ=255) tcgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTCGGTCTAAATCCAAATTTTGtacata > 2:3599094‑M2/23‑91 (MQ=255) ccGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAACTTTTGtatata > 2:2398547/1‑91 (MQ=255) ccGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGtatata > 1:491317/1‑91 (MQ=255) cgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATaa > 1:1906555‑M2/22‑91 (MQ=255) cgcataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATaa > 2:3847568‑M2/22‑91 (MQ=255) ttATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAtt < 1:3948901/91‑1 (MQ=255) cataacgggatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATACtt > 2:538747‑M2/20‑91 (MQ=255) tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt < 1:689706/91‑1 (MQ=255) tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt < 2:410241/91‑1 (MQ=255) tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt < 2:1045153/91‑1 (MQ=255) tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt > 2:2072369/1‑91 (MQ=255) tATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAAttt > 1:2950579/1‑91 (MQ=255) aTGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTa > 2:3357552/1‑91 (MQ=255) tGCGAGATGTCTTTTTTTTTTTTTTTTTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTAt > 2:1504324/1‑91 (MQ=255) gatgtctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCt < 1:2324474‑M2/80‑1 (MQ=255) ctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTa > 1:1055754‑M2/7‑91 (MQ=255) ctttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTa > 2:3512909‑M2/7‑91 (MQ=255) tttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAg < 1:3210222‑M2/86‑1 (MQ=255) tttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAg > 1:2645371‑M2/6‑91 (MQ=255) ttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGt < 1:3546696‑M2/87‑1 (MQ=255) ttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGt < 2:2410546‑M2/87‑1 (MQ=255) ttttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGt > 1:1060079‑M2/5‑91 (MQ=255) tttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTc > 2:1169093‑M2/4‑91 (MQ=255) tttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTc < 1:1020134‑M2/88‑1 (MQ=255) tttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTc < 1:718788‑M2/88‑1 (MQ=255) ttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCt < 1:3437399‑M2/89‑1 (MQ=255) ttTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCt < 2:3950296‑M2/89‑1 (MQ=255) tTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTg < 2:3266276‑M2/90‑1 (MQ=255) | ACATGAAAATAAAGGGCGCATTGTTATCGATTTCGGTGTAGATAAATAGTATTCATGAAAAAGACATCCCGTTATGCGAGATGTCTTTTTTAATTTAGTATTTGATATACATACCGCCTGAATCTGGTTCGGTAGGTATAAATCCAAATTTTGTATATAATTTATCCGCTGGGTAGTCTGC > USA300TCH1516_ALE/2492409‑2492589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |