BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2626762	305 (1.500)	16 (0.090)	11/144	NT	5.4%	coding (301/357 nt)	sarT	HTH‑type transcriptional regulator SarT
*	?	USA300TCH1516_ALE	= 2626767	289 (1.580)	16 (0.090)	11/144	NT	5.4%	coding (296/357 nt)	sarT	HTH‑type transcriptional regulator SarT

Only 100 of 412 total aligned reads displayed.

ACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTT  >  USA300TCH1516_ALE/2626672‑2626852

    cACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgt                                                                                        <  1:2554476‑M1/91‑5 (MQ=255)

     aCCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgta                                                                                       <  1:2026778‑M1/91‑6 (MQ=255)

     aCCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgta                                                                                       <  1:1575771‑M1/91‑6 (MQ=255)

      ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                                                                                      >  2:873760‑M2/1‑90 (MQ=255)

       cAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaa                                                                                     >  2:1583804‑M2/1‑89 (MQ=255)

        aaGATATTAAAATCTCGACACATACTCTATGTTTCATTAATATTTATTTCACTCAAACGATTTTTAATATAATTGTGTTGTTTTACAGaaa                                                                                    <  2:3849884‑M2/91‑4 (MQ=255)

        aaGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgtaaaa                                                                                    <  1:602212‑M1/91‑9 (MQ=255)

         agagATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaac                                                                                   >  1:1263692‑M2/1‑87 (MQ=255)

           atatTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaacaa                                                                                 <  2:309070‑M2/91‑7 (MQ=255)

             atTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaacaaca                                                                               <  1:3116379‑M2/91‑9 (MQ=255)

             atTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaacaaca                                                                               <  2:1271747‑M2/91‑9 (MQ=255)

              ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa                                                                              >  2:635927/1‑91 (MQ=255)

              ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa                                                                              >  2:3908768/1‑91 (MQ=255)

                aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGGTTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                                                                            >  1:2250559/1‑91 (MQ=255)

                aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                                                                            >  1:3753854/1‑91 (MQ=255)

                 aaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGa                                                                           >  1:384551/1‑91 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgtaaaacaacacaatta                                                                         <  1:1809444‑M1/91‑20 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTctgtaaaacaacacaatta                                                                         <  1:2080460‑M1/91‑20 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                         <  2:824046/91‑1 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                         >  1:2845557/1‑91 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                         <  1:1108727/91‑1 (MQ=255)

                   aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                         >  1:1378697/1‑91 (MQ=255)

                       cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                     >  1:3402793/1‑91 (MQ=255)

                       cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                     >  1:2366126/1‑91 (MQ=255)

                       cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                     >  2:602167/1‑91 (MQ=255)

                        gAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                                                                    >  1:2402528/1‑91 (MQ=255)

                        gAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                                                                    <  1:2753776/91‑1 (MQ=255)

                        gAAACATACTTTATGTTTCATTAATATTTATTTCAATCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                                                                    <  2:418389/91‑1 (MQ=255)

                          aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                  >  1:990655/1‑91 (MQ=255)

                          aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                  >  1:937502/1‑91 (MQ=255)

                          aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                  >  2:2366740/1‑91 (MQ=255)

                            cATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                                                                <  2:1158532/91‑1 (MQ=255)

                            cATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                                                                <  2:3018181/91‑1 (MQ=255)

                            cATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                                                                <  2:2117476/91‑1 (MQ=255)

                            cATACATTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                                                                <  2:3201524/91‑1 (MQ=255)

                             aagcTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctac                                                               <  1:3135519/88‑1 (MQ=255)

                             aTACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctac                                                               >  2:218220/1‑91 (MQ=255)

                              tACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctact                                                              >  1:1057871/1‑91 (MQ=255)

                               aaagtATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta                                                             >  1:1342219/5‑91 (MQ=255)

                               aaagtATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta                                                             >  1:1433683/5‑91 (MQ=255)

                               aCTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta                                                             >  2:3500007/1‑91 (MQ=255)

                               aCTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta                                                             >  1:2597460/1‑91 (MQ=255)

                                cTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTAt                                                            >  1:397480/1‑91 (MQ=255)

                                  ttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCa                                                          <  1:232171/91‑1 (MQ=255)

                                  ttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCa                                                          >  2:3933712/1‑91 (MQ=255)

                                   tATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCAt                                                         >  2:2639516/1‑91 (MQ=255)

                                     tGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCAtgt                                                       <  1:2647145/91‑1 (MQ=255)

                                       tttCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCAtgtcg                                                     >  2:671901/1‑89 (MQ=255)

                                       tttCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTgg                                                     >  2:3536089/1‑91 (MQ=255)

                                         tCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGt                                                   <  1:3265956/91‑1 (MQ=255)

                                         tCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGt                                                   >  2:1778132/1‑91 (MQ=255)

                                          cATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtc                                                  >  2:2595545/1‑91 (MQ=255)

                                          cATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtc                                                  <  2:2866922/91‑1 (MQ=255)

                                           aTTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtct                                                 <  1:436290/91‑1 (MQ=255)

                                            ttAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtctc                                                <  2:1553581/91‑1 (MQ=255)

                                             tAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTctct                                               >  2:1528002/1‑91 (MQ=255)

                                              aaTATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTa                                              <  1:1940551/91‑1 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            >  1:1511866/1‑91 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            <  2:2683845/91‑1 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            >  2:2006111/1‑91 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            <  2:1973013/91‑1 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            >  1:1219647/1‑91 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                            >  2:2946563/1‑91 (MQ=255)

                                                tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACACTTCTACTATCATGTGGGTCTCTACa                                            >  1:3667053/1‑91 (MQ=255)

                                                 atttatttCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACAt                                           <  2:136317/91‑1 (MQ=255)

                                                    tatttCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTa                                        <  2:2622909/91‑1 (MQ=255)

                                                     atttCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTAt                                       <  1:1462004/91‑1 (MQ=255)

                                                        tCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCa                                    >  1:360308/1‑91 (MQ=255)

                                                          aCTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCaaa                                  >  2:338713/1‑90 (MQ=255)

                                                          aCTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAg                                  <  1:1278005/91‑1 (MQ=255)

                                                           cTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTATATTTATTCAAGt                                 <  1:3038161/91‑1 (MQ=255)

                                                           cTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGt                                 >  2:3737748/1‑91 (MQ=255)

                                                           cTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGt                                 >  1:2870082/1‑91 (MQ=255)

                                                               aaaGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAAcc                             <  1:2105688/91‑1 (MQ=255)

                                                                  gATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCtt                          <  1:1695144/91‑1 (MQ=255)

                                                                    tttttATTATTATTTTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCtttt                        >  2:2514756/1‑91 (MQ=255)

                                                                     ttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttttt                       <  1:3700906/91‑1 (MQ=255)

                                                                        tAATATAATTGTGTTGTTTtacagaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttc                    >  1:1092089‑M1/1‑19 (MQ=255)

                                                                           tataATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATaa                 <  2:1450276/91‑1 (MQ=255)

                                                                            ataATTGTGTTGTTTtacagaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgaga                >  1:3489617‑M1/1‑15 (MQ=255)

                                                                            ataATTGTGTTGTTTtacagaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgaga                >  2:2976136‑M1/1‑15 (MQ=255)

                                                                             taATTGTGTTGTTTTACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagat               <  1:3518217‑M2/91‑73 (MQ=255)

                                                                               aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACGTTTATTCAAGTAACCCTTTTTTGCTAAATCt             >  1:1971655/1‑91 (MQ=255)

                                                                               aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt             <  1:1153971/91‑1 (MQ=255)

                                                                               aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt             <  1:1870764/91‑1 (MQ=255)

                                                                               aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt             >  2:1669218/1‑91 (MQ=255)

                                                                               aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt             >  2:2739015/1‑91 (MQ=255)

                                                                                ttGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCtt            <  1:692855/91‑1 (MQ=255)

                                                                                 tgtgTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCttt           <  2:2313975/91‑1 (MQ=255)

                                                                                  gtgtTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCttta          <  2:3622185/91‑2 (MQ=255)

                                                                                   tgttgtTTctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaat         <  1:3445825‑M1/91‑84 (MQ=255)

                                                                                     ttgttTctgtagaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgatacataaagtatgtttcgagattttaatat       <  2:2176644‑M1/91‑86 (MQ=255)

                                                                                     ttgttTctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatat       <  1:2525151‑M1/91‑86 (MQ=255)

                                                                                     ttgttTctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatat       <  2:1878006‑M1/91‑86 (MQ=255)

                                                                                     ttgtgTctgtaaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacagaaagtatgtttcgagattttaatat       <  2:3699645‑M1/91‑86 (MQ=255)

                                                                                      tgttTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGc      >  1:830630/1‑91 (MQ=255)

                                                                                      tgttTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGc      <  2:248519/91‑1 (MQ=255)

                                                                                       gttTTACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatct     <  1:2727814‑M2/91‑83 (MQ=255)

                                                                                        tttctgtaaaacaacacaattatattaaaaatcgtttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatctt    <  1:3234602‑M1/91‑89 (MQ=255)

                                                                                          ttACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGcgtaa  <  1:1008121/91‑5 (MQ=255)

ACTGCACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTT  >  USA300TCH1516_ALE/2626672‑2626852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.