BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2626762	305 (1.500)	16 (0.090)	11/144	NT	5.4%	coding (301/357 nt)	sarT	HTH‑type transcriptional regulator SarT
*	?	USA300TCH1516_ALE	= 2626767	289 (1.580)	16 (0.090)	11/144	NT	5.4%	coding (296/357 nt)	sarT	HTH‑type transcriptional regulator SarT

Only 100 of 388 total aligned reads displayed.

ACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTAACAA  >  USA300TCH1516_ALE/2626677‑2626857

 ccAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGa                                                                                           >  2:873760‑M2/1‑90 (MQ=255)

    agagATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaac                                                                                        >  1:1263692‑M2/1‑87 (MQ=255)

      atatTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaacaa                                                                                      <  2:1878006‑M2/91‑7 (MQ=255)

      atatTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTAGTTTTACAGaaacaa                                                                                      <  2:309119‑M2/91‑7 (MQ=255)

      atatTAAAATCTCGAAACATACTTTATGTATCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTCTACAGaaacaa                                                                                      <  2:2176644‑M2/91‑7 (MQ=255)

        atTAAAATCTCGAACCACACTTTATGTTTCATTCATATTCATTTCCCCCCAAAGATTTTTCATATAATTGTGTTGTTTTACAGAaacaccc                                                                                    >  2:3954364/1‑88 (MQ=255)

        atTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGaaacaaca                                                                                    <  1:3445825‑M2/91‑9 (MQ=255)

         ttAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAAcaacaa                                                                                   >  1:372575/1‑91 (MQ=255)

           aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGGTTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                                                                                 >  1:2250559/1‑91 (MQ=255)

           aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                                                                                 <  2:3477969/91‑1 (MQ=255)

           aaaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATg                                                                                 <  2:2648326/91‑1 (MQ=255)

            aaaTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGa                                                                                >  1:384486/1‑91 (MQ=255)

              aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                              <  1:1108727/91‑1 (MQ=255)

              aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                              <  1:1793562/91‑1 (MQ=255)

              aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                              <  2:2636193/91‑1 (MQ=255)

              aTCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAACATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGAtt                                                                              <  2:3044279/91‑1 (MQ=255)

               tctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTCTGTAaaacaacacaattat                                                                             >  2:2976136‑M2/1‑76 (MQ=255)

                ctcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTAc                                                                            <  1:3956587/91‑1 (MQ=255)

                 tcGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAACGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACa                                                                           >  2:204189/1‑91 (MQ=255)

                  cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                          <  2:1169761/91‑1 (MQ=255)

                  cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                          >  1:3402793/1‑91 (MQ=255)

                  cGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAt                                                                          >  2:2714655/1‑91 (MQ=255)

                   gAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                                                                         <  2:1763018/91‑1 (MQ=255)

                   gAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAtt                                                                         <  1:2753776/91‑1 (MQ=255)

                    aaaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACAttt                                                                        <  2:1454916/91‑1 (MQ=255)

                     aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                       <  1:2043925/91‑1 (MQ=255)

                     aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                       >  1:1406041/1‑91 (MQ=255)

                     aaCATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTc                                                                       >  1:3453037/1‑91 (MQ=255)

                       cATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTcta                                                                     >  1:1675250/1‑91 (MQ=255)

                       cATACTTGATGGTTCATTAATATTTATTTCACGCAAAAGATTTTTAATATAATTGTGTGGTTTTACAGAAACAACAATGATTACATTTcta                                                                     <  2:2873817/91‑1 (MQ=255)

                        aTACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATATTTTTGTTGTTTTACAGAAACAACAATGATTACATTTctac                                                                    >  2:222070/1‑91 (MQ=255)

                         tACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctact                                                                   <  1:3043314/91‑1 (MQ=255)

                          aCTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTctacta                                                                  <  2:3863288/91‑1 (MQ=255)

                            tttATGTTTCATTAATATTTAATTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATc                                                                >  1:1441580/1‑91 (MQ=255)

                             ttATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCa                                                               <  1:1370161/91‑1 (MQ=255)

                                tGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCAtgt                                                            <  1:949855/91‑1 (MQ=255)

                                   ttCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTggg                                                         <  2:1390799/91‑1 (MQ=255)

                                   ttCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTggg                                                         <  1:1046025/91‑1 (MQ=255)

                                    tCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGt                                                        <  1:3265956/91‑1 (MQ=255)

                                     cATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtc                                                       <  1:2580146/91‑1 (MQ=255)

                                     cATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtc                                                       >  2:2595545/1‑91 (MQ=255)

                                      aTTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtct                                                      >  2:1344327/1‑91 (MQ=255)

                                       ttAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGtctc                                                     <  2:1553735/91‑1 (MQ=255)

                                        tAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTctct                                                    >  2:1528002/1‑91 (MQ=255)

                                        tAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTctct                                                    <  2:620142/91‑1 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 >  1:1219647/1‑91 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 >  1:410203/1‑91 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 >  1:719986/1‑91 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 >  2:2006111/1‑91 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 <  2:643796/91‑1 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACa                                                 <  1:3133996/91‑1 (MQ=255)

                                           tatttattTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACACTTCTACTATCATGTGGGTCTCTACa                                                 >  1:3667053/1‑91 (MQ=255)

                                            atttatttCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACAt                                                >  1:1993946/1‑91 (MQ=255)

                                                atttCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTAt                                            <  1:186896/91‑1 (MQ=255)

                                                   tCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCa                                         >  1:360308/1‑91 (MQ=255)

                                                      cTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGt                                      <  1:1083967/91‑1 (MQ=255)

                                                      cTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGt                                      >  2:3737748/1‑91 (MQ=255)

                                                       tCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTa                                     <  2:1065902/91‑1 (MQ=255)

                                                       tCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTa                                     >  1:3002392/1‑91 (MQ=255)

                                                          aaaGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAAcc                                  <  1:2105688/91‑1 (MQ=255)

                                                          aaaGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGAGTCTCTACATTTATTCAAGTAAcc                                  >  2:3685166/1‑91 (MQ=255)

                                                              ttttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttt                              >  2:2801553/2‑91 (MQ=255)

                                                               tttttATTATTATTTTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCtttt                             >  2:2514756/1‑91 (MQ=255)

                                                                ttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttttt                            <  1:3700906/91‑1 (MQ=255)

                                                                ttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttttt                            >  2:3520947/1‑91 (MQ=255)

                                                                ttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttttt                            >  1:2861313/1‑91 (MQ=255)

                                                                ttttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCttttt                            >  2:77316/1‑91 (MQ=255)

                                                                 tttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCtttttt                           >  1:2338298/1‑91 (MQ=255)

                                                                  ttAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTg                          <  1:252597/91‑1 (MQ=255)

                                                                   tAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGa                         <  1:3199527/91‑1 (MQ=255)

                                                                    aaTATAATTGTGATGTTTTACAGaaacaacacaattatattaaaaatcttttgtgtgaactaaatattaatgaaccataacgtctttttcg                        <  2:3925193‑M2/91‑69 (MQ=255)

                                                                     atatAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATa                       <  2:2328020/91‑1 (MQ=255)

                                                                       ataATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATaaa                     >  1:127794/1‑91 (MQ=255)

                                                                        taATTGTGTTGTTTTACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagat                    <  1:3518217‑M2/91‑73 (MQ=255)

                                                                        taATTGTGTTGTTTTACAGAAACAACAATGATTCCATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAAt                    >  2:3578728/1‑91 (MQ=255)

                                                                         aaTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTTATAAATc                   >  2:3892785/1‑91 (MQ=255)

                                                                          aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt                  <  1:1324023/91‑1 (MQ=255)

                                                                          aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt                  <  1:196400/91‑1 (MQ=255)

                                                                          aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt                  <  1:1153971/91‑1 (MQ=255)

                                                                          aTTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCt                  >  2:1669218/1‑91 (MQ=255)

                                                                           ttGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCtt                 <  1:2433612/91‑1 (MQ=255)

                                                                           ttGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCtt                 <  1:46528/91‑1 (MQ=255)

                                                                            tgtgTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCttt                <  1:1923042/91‑1 (MQ=255)

                                                                            tgtgTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCttt                <  2:3207246/91‑1 (MQ=255)

                                                                                 tgttTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGc           <  2:248519/91‑1 (MQ=255)

                                                                                  gttTTACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatct          <  1:2727814‑M2/91‑83 (MQ=255)

                                                                                   ttttACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatctt         <  1:602212‑M2/91‑84 (MQ=255)

                                                                                   ttttACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCtt         >  1:878177/1‑91 (MQ=255)

                                                                                     ttACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatcttgg       <  1:1500909‑M2/91‑86 (MQ=255)

                                                                                     ttACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGcgtaa       <  1:1008121/91‑5 (MQ=255)

                                                                                     ttACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCtttt       <  2:556461/91‑1 (MQ=255)

                                                                                     ttACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCtttt       <  2:1975094/91‑1 (MQ=255)

                                                                                      tACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatcttggt      <  1:1575771‑M2/91‑87 (MQ=255)

                                                                                      tACAGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatcttggt      <  1:239648‑M2/91‑87 (MQ=255)

                                                                                      tACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTa      >  2:2947431/1‑91 (MQ=255)

                                                                                       aCAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTaa     <  1:2807679/91‑1 (MQ=255)

                                                                                       aCAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTaa     >  2:2610884/1‑91 (MQ=255)

                                                                                        cAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTAAc    <  1:2292382/91‑1 (MQ=255)

                                                                                        cAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTAAc    <  1:2384331/91‑1 (MQ=255)

                                                                                         aGaaacaacacaattatattaaaaatcttttgagtgaaataaatattaatgaaacataaagtatgtttcgagattttaatatcttggtgca   <  1:2641575‑M2/91‑90 (MQ=255)

ACCAAGATATTAAAATCTCGAAACATACTTTATGTTTCATTAATATTTATTTCACTCAAAAGATTTTTAATATAATTGTGTTGTTTTACAGAAACAACAATGATTACATTTCTACTATCATGTGGGTCTCTACATTTATTCAAGTAACCCTTTTTTGATAAATCTTTTACGCTTTTAACAA  >  USA300TCH1516_ALE/2626677‑2626857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.