BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2636356 =	210 (1.030)	9 (0.050)	7/138	NT	5.5%	intergenic (‑409/+60)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter
*	?	USA300TCH1516_ALE	2636404 =	127 (0.720)	9 (0.050)	7/138	NT	5.5%	intergenic (‑457/+12)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter

Only 100 of 257 total aligned reads displayed.

TTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636267‑2636446

taacatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTa                                                                                           <  1:1651671‑M1/2‑1 (MQ=255)

taacatggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTa                                                                                           >  2:3637011‑M1/90‑91 (MQ=255)

 tGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATaa                                                                                          <  1:2198050/91‑1 (MQ=255)

  gAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATaaa                                                                                         <  2:3611338/91‑1 (MQ=255)

   catggtcattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAAc                                                                                        >  2:3096097‑M1/87‑91 (MQ=255)

     aCGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgt                                                                                      >  2:197294/1‑91 (MQ=255)

      cGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtg                                                                                     >  1:2802588/1‑91 (MQ=255)

       gCCTTTTATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    >  2:2330702/1‑91 (MQ=255)

       gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    >  2:2079026/1‑91 (MQ=255)

       gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    <  2:2700759/91‑1 (MQ=255)

       gCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACgtgt                                                                                    <  2:674275/91‑1 (MQ=255)

        ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGtt                                                                                   >  1:1016524/1‑91 (MQ=255)

        ccTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGtt                                                                                   >  1:3864089/1‑91 (MQ=255)

         cattattagaaacgattatttccgtttcaggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGttt                                                                                  >  1:1051987‑M1/81‑91 (MQ=255)

           ttCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCa                                                                                >  1:225401/1‑91 (MQ=255)

            tcatcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCaa                                                                               >  1:1939525/1‑91 (MQ=255)

              atcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAgg                                                                             >  2:815903/1‑91 (MQ=255)

              atcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAgg                                                                             <  1:2627262/91‑1 (MQ=255)

              atcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTCTCAAgg                                                                             <  1:3079186/91‑1 (MQ=255)

               tcaCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGc                                                                            <  2:3463357/91‑1 (MQ=255)

                 aCTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCaa                                                                          <  1:2951587/91‑1 (MQ=255)

                   tctAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAata                                                                        <  1:2504547/91‑1 (MQ=255)

                   tctAAAATACCCAATATACTTATTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAata                                                                        >  1:2400844/1‑91 (MQ=255)

                     tAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatata                                                                      >  1:3704930/1‑91 (MQ=255)

                      aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  2:1987785/91‑1 (MQ=255)

                      aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  1:1296539/91‑1 (MQ=255)

                      aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  1:487891/91‑1 (MQ=255)

                      aaaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAatatat                                                                     <  2:3693437/91‑1 (MQ=255)

                       aaaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATAtt                                                                    >  2:3383429/1‑91 (MQ=255)

                        aaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTg                                                                   <  2:2377390/91‑1 (MQ=255)

                        aaTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAAGAAACGTGTTTCAAGGCAATATATTg                                                                   >  1:3688439/1‑91 (MQ=255)

                         aTACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGc                                                                  >  1:497929/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  1:3829878/1‑91 (MQ=255)

                            cccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAt                                                               >  2:392128/1‑91 (MQ=255)

                             ccAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAAtt                                                              <  1:846633/91‑1 (MQ=255)

                              cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTa                                                             >  2:2890307/1‑91 (MQ=255)

                              cAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTa                                                             <  2:91847/91‑1 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  1:1945368/1‑91 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           <  1:3484165/91‑1 (MQ=255)

                                atatACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTAcc                                                           >  2:220973/1‑91 (MQ=255)

                                  ataCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTa                                                         <  1:2844012/91‑1 (MQ=255)

                                   taCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaa                                                        <  2:143959/91‑1 (MQ=255)

                                    aCTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaa                                                       <  1:3645283/91‑1 (MQ=255)

                                      tttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     <  2:2343724/91‑1 (MQ=255)

                                      ggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     >  1:1195619‑M1/52‑91 (MQ=255)

                                      ggtatcatcttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTaaaaa                                                     >  2:2272706‑M1/52‑91 (MQ=255)

                                       ttttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAACAATAAACGTGTTTCAAGGCAATATATTGCGATTACCTAAAAac                                                    >  1:3961498/1‑91 (MQ=255)

                                         ttATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCCTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAacac                                                  <  2:3491843/91‑1 (MQ=255)

                                          tataTCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACg                                                 <  1:1843152/91‑1 (MQ=255)

                                          tataTCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACg                                                 >  2:3742578/1‑91 (MQ=255)

                                           atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGt                                                <  1:314359/91‑1 (MQ=255)

                                           atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGt                                                >  1:3906121/1‑91 (MQ=255)

                                           atatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGt                                                >  1:2778744/1‑91 (MQ=255)

                                            tatCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGtt                                               <  2:3346630/91‑1 (MQ=255)

                                            tatCGTCCGGATTCGGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGtt                                               <  2:581595/91‑1 (MQ=255)

                                              cttcattttattcattagcttatttgtttaactaaatattaagTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTa                                             >  1:1726108‑M1/44‑91 (MQ=255)

                                               cGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTAc                                            >  1:568678/1‑91 (MQ=255)

                                                 ttCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACtt                                          <  1:2063047/91‑1 (MQ=255)

                                                   cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                        >  2:889134/1‑91 (MQ=255)

                                                   cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                        <  2:492494/91‑1 (MQ=255)

                                                    ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAat                                       <  2:1579421/91‑1 (MQ=255)

                                                    ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAat                                       >  1:3586426/1‑91 (MQ=255)

                                                     gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAata                                      <  2:1265997/91‑1 (MQ=255)

                                                      aTTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAatat                                     <  2:1021446/91‑1 (MQ=255)

                                                         cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                  >  2:2767135/1‑91 (MQ=255)

                                                         cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                  >  1:3020929/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:783027/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:2316504/1‑91 (MQ=255)

                                                          tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                 >  1:655656/1‑91 (MQ=255)

                                                           gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                >  1:2131597/1‑91 (MQ=255)

                                                            aGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGtt                               >  1:3350009/1‑91 (MQ=255)

                                                             gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                              <  2:95691/91‑1 (MQ=255)

                                                               aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            <  1:1589819/91‑1 (MQ=255)

                                                               aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            >  1:266088/1‑91 (MQ=255)

                                                               aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            <  1:3722555/91‑1 (MQ=255)

                                                               aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                            <  2:438246/91‑1 (MQ=255)

                                                                 ttCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACa                          <  2:2668149/91‑1 (MQ=255)

                                                                   cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTCAAAACACGTTTACTTAATATTTAGTTAAACaaa                        >  1:3242582/1‑91 (MQ=255)

                                                                    aGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                       >  2:1887036/1‑91 (MQ=255)

                                                                    aGACAATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTAAAATTACAAAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                       <  2:73717/91‑1 (MQ=255)

                                                                        gATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGc                   <  2:3864089/91‑1 (MQ=255)

                                                                        gATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGc                   >  1:2583952/1‑91 (MQ=255)

                                                                         aTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCt                  <  1:2576807/91‑1 (MQ=255)

                                                                         aTTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCt                  >  2:2180018/1‑91 (MQ=255)

                                                                          ttttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTa                 >  2:61246/1‑91 (MQ=255)

                                                                           tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                <  1:3570320/91‑1 (MQ=255)

                                                                             tCTGCATAAAAATAAACGTGTTTCAAGGCAGTATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              <  2:2001629/91‑1 (MQ=255)

                                                                             tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              >  1:3509565/1‑91 (MQ=255)

                                                                             tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              >  2:1355108/1‑91 (MQ=255)

                                                                             tCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg              >  2:246569/1‑91 (MQ=255)

                                                                               tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  2:3109918/91‑1 (MQ=255)

                                                                               tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            >  1:882296/1‑91 (MQ=255)

                                                                               tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  2:1069372/91‑1 (MQ=255)

                                                                               tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  1:1173038/91‑1 (MQ=255)

                                                                               tGCATAAAAATAAACATGTTTCAAGGCAATATATTACAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa            <  2:1750685/91‑1 (MQ=255)

                                                                                gCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt           <  2:2740474/91‑1 (MQ=255)

                                                                                    aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa       <  2:3829550/91‑1 (MQ=255)

                                                                                       aaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGa    >  1:3824357/1‑91 (MQ=255)

                                                                                        aTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGaa   <  1:3197544/91‑1 (MQ=255)

                                                                                        aTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGaa   <  1:3749332/91‑1 (MQ=255)

TTGAAACGCCTTTCATCACTCTAAAATACCCAATATACTTTTTATATCGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAG  >  USA300TCH1516_ALE/2636267‑2636446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.