BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2636356 =	210 (1.030)	9 (0.050)	7/138	NT	5.5%	intergenic (‑409/+60)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter
*	?	USA300TCH1516_ALE	2636404 =	127 (0.720)	9 (0.050)	7/138	NT	5.5%	intergenic (‑457/+12)	fnbA_2/gntT	Fibronectin‑binding protein A/High‑affinity gluconate transporter

Only 100 of 215 total aligned reads displayed.

CGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636314‑2636494

 gTTCGGATTCCGAGTATTTCAGACGATTTTCTGCATAAAAATAACCGAGTTTCAAGGCAATATAGTGCAATTACCTAAAAACACGTTTACt                                                                                           >  2:906050/1‑91 (MQ=255)

    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                                                                        <  1:1194236/91‑1 (MQ=255)

    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                                                                        >  2:889134/1‑91 (MQ=255)

    cGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTaa                                                                                        <  2:492494/91‑1 (MQ=255)

     ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAat                                                                                       >  1:3586426/1‑91 (MQ=255)

     ggATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAat                                                                                       <  2:1579421/91‑1 (MQ=255)

      gATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAata                                                                                      <  2:2851520/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  2:2051313/91‑1 (MQ=255)

        ttCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAtt                                                                                    <  2:1894720/91‑1 (MQ=255)

         tCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATAttt                                                                                   <  1:916072/91‑1 (MQ=255)

          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                                                                  <  2:1149480/91‑1 (MQ=255)

          cTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTa                                                                                  >  1:3020929/1‑91 (MQ=255)

           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:783027/1‑91 (MQ=255)

           tGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAg                                                                                 >  1:2316504/1‑91 (MQ=255)

            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                                                                >  2:391201/1‑91 (MQ=255)

            gAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGt                                                                                >  1:2131597/1‑91 (MQ=255)

             aGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGtt                                                                               >  1:3350009/1‑91 (MQ=255)

              gTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTa                                                                              <  2:95691/91‑1 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  1:2318485/91‑1 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  1:2190513/91‑1 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            >  1:265981/1‑91 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  1:1589819/91‑1 (MQ=255)

                aTTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTaaa                                                                            <  1:3722555/91‑1 (MQ=255)

                  ttCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACa                                                                          >  2:974018/1‑91 (MQ=255)

                   tCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaa                                                                         >  2:3107129/1‑91 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTCAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        >  1:3242582/1‑91 (MQ=255)

                    cAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACaaa                                                                        <  2:1422064/91‑1 (MQ=255)

                     aGACAATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTAAAATTACAAAAAAACACGTTTACTTAATATTTAGTTAAACAAAt                                                                       <  2:73717/91‑1 (MQ=255)

                         gATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGc                                                                   >  1:2583952/1‑91 (MQ=255)

                           ttttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTa                                                                 >  2:403196/1‑91 (MQ=255)

                            tttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                <  1:1792861/91‑1 (MQ=255)

                            attCTGAATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaa                                                                <  2:670424/90‑1 (MQ=255)

                             ttCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAAt                                                               >  2:1272101/1‑91 (MQ=255)

                              tCTGCATAAAAATAAACGTGTTTCAAGGCAGTATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATg                                                              <  2:2001629/91‑1 (MQ=255)

                              tCTGAATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTaaag                                                              <  2:2689977/91‑3 (MQ=255)

                               cTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGa                                                             <  1:2528045/91‑1 (MQ=255)

                                tGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGaa                                                            <  2:3111118/91‑1 (MQ=255)

                                 gCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                           <  2:2740474/91‑1 (MQ=255)

                                 gCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAAt                                                           <  2:3576509/91‑1 (MQ=255)

                                   aTAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGTATaa                                                         <  1:3127965/91‑1 (MQ=255)

                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       <  2:3829472/91‑1 (MQ=255)

                                     aaaaaTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATaaaa                                                       <  2:3829551/91‑1 (MQ=255)

                                       aagtaaacgtgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATg                                                     >  1:3859728‑M2/52‑91 (MQ=255)

                                        agtaaacgtgtttttaggtaattgcaatatattgccttgaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGa                                                    >  1:862958‑M2/51‑91 (MQ=255)

                                         aTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGaa                                                   <  1:3749332/91‑1 (MQ=255)

                                         aTAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGaa                                                   <  1:3197544/91‑1 (MQ=255)

                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  >  1:2005771‑M1/1‑91 (MQ=255)

                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  >  2:228778‑M1/1‑91 (MQ=255)

                                          TAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAg                                                  <  1:2728441‑M1/91‑1 (MQ=255)

                                            AACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgat                                                <  2:225720‑M1/91‑1 (MQ=255)

                                            AACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTGTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgat                                                >  1:3952628‑M1/1‑91 (MQ=255)

                                             ACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatg                                               <  2:1965605‑M1/91‑1 (MQ=255)

                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              <  2:3526861‑M1/91‑1 (MQ=255)

                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              <  1:163440‑M1/91‑1 (MQ=255)

                                              CGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAgatga                                              >  1:3145273‑M1/1‑91 (MQ=255)

                                                TGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATa                                            <  1:3426466‑M1/91‑1 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  2:1768012‑M1/1‑91 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  2:2155495‑M1/1‑91 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           <  2:2443796‑M1/91‑1 (MQ=255)

                                                 GTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAc                                           >  2:3688439‑M1/1‑91 (MQ=255)

                                                  TTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATAcc                                          <  2:455253‑M1/91‑1 (MQ=255)

                                                     ttaggtaattgcaatatattgcctaaaaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGa                                       >  1:1213349‑M2/38‑91 (MQ=255)

                                                     cAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAACTGAAGATGATACCTGa                                       >  2:3782731/1‑91 (MQ=255)

                                                     cAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGa                                       >  2:1022875/1‑91 (MQ=255)

                                                        ggCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                    >  2:1990093/1‑91 (MQ=255)

                                                        ggCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                    >  2:1373968/1‑91 (MQ=255)

                                                        ggCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAAc                                    >  2:2757145/1‑91 (MQ=255)

                                                         gCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACg                                   <  2:1337828/91‑1 (MQ=255)

                                                         gCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACg                                   <  1:1171347/91‑1 (MQ=255)

                                                          cAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACgg                                  >  2:3440237/1‑91 (MQ=255)

                                                             tatatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                               <  1:169333/91‑1 (MQ=255)

                                                             tatatTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGaaa                               >  1:1342352/1‑91 (MQ=255)

                                                                 ttGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAaataat                           <  1:3835944/91‑1 (MQ=255)

                                                                  tGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATc                          >  1:3062586/1‑91 (MQ=255)

                                                                   gCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCg                         >  1:594736/1‑91 (MQ=255)

                                                                   gCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCg                         <  2:603579/91‑1 (MQ=255)

                                                                     aaTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGtt                       <  1:2972731/91‑1 (MQ=255)

                                                                      aTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGTAATAATCGttt                      >  1:3579830/1‑91 (MQ=255)

                                                                      aTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGttt                      <  1:100348/91‑1 (MQ=255)

                                                                      aTTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGttt                      >  1:2918401/1‑91 (MQ=255)

                                                                       ttACCTAAATACACGTTTACTTAATATTTAGTGAAACGAATAAGCTAATGAATAAAATGAAGATGATACCTGTAACGGAAATAATCGTTTc                     <  2:1686256/91‑1 (MQ=255)

                                                                       ttACCT‑AAAACACGTTTACTTAATATTTAGTTAAACAAATCAGCTAATGCATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCt                    >  2:2581677/1‑91 (MQ=255)

                                                                         aCCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCta                   >  1:2464260/1‑91 (MQ=255)

                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaa                  >  1:2636492/1‑91 (MQ=255)

                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaa                  >  1:680859/1‑91 (MQ=255)

                                                                          ccTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTCAAACGGAAATAATCGTTTCtaa                  >  2:3001519/1‑91 (MQ=255)

                                                                           cTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaat                 <  2:2097804/91‑1 (MQ=255)

                                                                            tAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaata                >  1:56304/1‑91 (MQ=255)

                                                                             aaaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCtaataa               >  1:1707804/1‑91 (MQ=255)

                                                                              aaaaCACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTaataat              >  2:1233617/1‑91 (MQ=255)

                                                                               aaacacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATg             >  1:1051987‑M2/12‑91 (MQ=255)

                                                                                  cacgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGAcc          <  1:103137‑M2/83‑1 (MQ=255)

                                                                                   acgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCa         <  2:3398825‑M2/84‑1 (MQ=255)

                                                                                    cgtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAACGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCAt        >  1:1642780‑M2/7‑91 (MQ=255)

                                                                                     gtttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATg       >  2:3096097‑M2/6‑91 (MQ=255)

                                                                                       ttaCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGtt     >  2:1882732‑M2/4‑91 (MQ=255)

                                                                                        taCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa    >  2:883501‑M2/3‑91 (MQ=255)

                                                                                        taCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa    <  2:2496432‑M2/89‑1 (MQ=255)

                                                                                        taCTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTa    >  2:3637011‑M2/3‑91 (MQ=255)

                                                                                          cTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAg  >  2:386735/1‑91 (MQ=255)

CGTTCGGATTCTGAGTATTTCAGACGATTTTCTGCATAAAAATAAACGTGTTTCAAGGCAATATATTGCAATTACCTAAAAACACGTTTACTTAATATTTAGTTAAACAAATAAGCTAATGAATAAAATGAAGATGATACCTGAAACGGAAATAATCGTTTCTAATAATGACCATGTTAAG  >  USA300TCH1516_ALE/2636314‑2636494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.