New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2665481 =139 (0.680)21 (0.120) 10/138 NT 14.7% intergenic (‑108/+71) USA300TCH1516_02535/sdhA hypothetical protein/L‑serine dehydratase, alpha chain
?USA300TCH1516_ALE 2665525 = 125 (0.710)intergenic (‑152/+27) USA300TCH1516_02535/sdhA hypothetical protein/L‑serine dehydratase, alpha chain

Only 100 of 279 total aligned reads displayed.

GTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATAT  >  USA300TCH1516_ALE/2665391‑2665571
                                                                                          |                                                                                          
  tATTTTAGATATACGGGGGCGCTTTTTCAATCACTATTTTGATTTGTATGCATTTTCCATAAATCTTTCAATTTCTTTAGAGATAATTtag                                                                                          >  2:726355/1‑91 (MQ=255)
  tATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAG                                                                                          >  2:2558918‑M1/1‑91 (MQ=255)
   ggcgaagcaattaaacgtaaaatctttggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaaaga                                                                                         <  1:243166‑M1/4‑1 (MQ=255)
   ggcgaagcaattaaacgtaaaatctttggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaaaga                                                                                         <  1:1678321‑M1/4‑1 (MQ=255)
     tttAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAG                                                                                       >  1:1996305‑M1/1‑91 (MQ=255)
     cgaagcaattaaacgtaaaatctttggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaaagaag                                                                                       >  2:2673517‑M1/86‑91 (MQ=255)
      ttAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGC                                                                                      >  2:627900‑M1/1‑91 (MQ=255)
      ttAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGC                                                                                      <  1:2289386‑M1/91‑1 (MQ=255)
      gaagcaattaaacgtaaaatctttggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGc                                                                                      <  1:970930‑M1/7‑1 (MQ=255)
        aGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCAT                                                                                    >  2:2732424‑M1/1‑91 (MQ=255)
         gATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATC                                                                                   >  2:1876751‑M1/1‑91 (MQ=255)
          caattaaacgtaaaatctttggcacagctgaagctatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCatct                                                                                  >  1:3244736‑M1/81‑91 (MQ=255)
          atatACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCT                                                                                  <  1:2371892‑M1/91‑1 (MQ=255)
            ataCGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCatctat                                                                                >  1:3177013/1‑91 (MQ=255)
               cGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTg                                                                             <  1:2541203/91‑1 (MQ=255)
                 ggggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGt                                                                           >  1:1274786/1‑91 (MQ=255)
                 ggggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGt                                                                           <  2:2880462/91‑1 (MQ=255)
                  gggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTa                                                                          <  1:661023/91‑1 (MQ=255)
                  gggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTa                                                                          <  1:37176/91‑1 (MQ=255)
                  gggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTa                                                                          >  1:1606349/1‑91 (MQ=255)
                   ggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTAc                                                                         <  1:2117331/91‑1 (MQ=255)
                   ggCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTAc                                                                         <  2:2447432/91‑1 (MQ=255)
                     cgcTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTa                                                                       >  1:3068397/1‑91 (MQ=255)
                     cgcTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTa                                                                       <  2:1881953/91‑1 (MQ=255)
                     cgcTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTa                                                                       <  1:1181296/91‑1 (MQ=255)
                      gcTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTaa                                                                      <  1:2934629/91‑1 (MQ=255)
                           tGCACTCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCGGAGATAATTAAGAAGCATCTATCTGGTACTAATGATc                                                                 <  2:3902135/91‑1 (MQ=255)
                           tGCAATCACTATTTTGATTAGTATGCATTTTCCATCAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATc                                                                 <  2:2196973/91‑1 (MQ=255)
                           tGCAATCACTATTTTGATTAGTATGCATTTTCCAAAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATc                                                                 <  2:2280056/91‑1 (MQ=255)
                            gCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATcc                                                                >  2:437238/1‑91 (MQ=255)
                            gCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATcc                                                                <  1:1862314/91‑1 (MQ=255)
                             tggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCca                                                               >  2:3024708‑M1/62‑91 (MQ=255)
                             tggcacagctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCca                                                               >  2:1683682‑M1/62‑91 (MQ=255)
                               aTCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCCACTTCTTCAGAGCTAATTAAGAAGCATCTATCTGGTACTAATGCTCcaga                                                             >  2:283052/1‑91 (MQ=255)
                               aTCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCcaga                                                             >  1:2295951/1‑91 (MQ=255)
                                tCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTgtccggatcattagtaccagat                                                            <  2:3483656‑M1/91‑23 (MQ=255)
                                tCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCcagac                                                            >  1:380370/1‑91 (MQ=255)
                                 cACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACa                                                           >  2:786170‑M2/1‑90 (MQ=255)
                                  aCTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTgtctggatcattagtaccagatag                                                          <  2:153290‑M1/91‑25 (MQ=255)
                                  aCTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACag                                                          <  1:3594323‑M2/91‑3 (MQ=255)
                                  aCTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACag                                                          >  1:3494446‑M2/1‑89 (MQ=255)
                                  aCTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACag                                                          <  2:1585853‑M2/91‑3 (MQ=255)
                                   cTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACaga                                                         >  1:2083020‑M2/1‑88 (MQ=255)
                                   agctgaagatatggttaaaaataattaatgggataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCcagacaga                                                         >  2:3271955‑M1/56‑91 (MQ=255)
                                    tATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTgtctggatcattagtaccagatagat                                                        <  2:2904833‑M1/91‑27 (MQ=255)
                                    tATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagat                                                        >  2:211783‑M2/1‑87 (MQ=255)
                                    gctgaagatatggttcaaaataatttctgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCCAGACAGAt                                                        >  2:3420248‑M1/55‑91 (MQ=255)
                                     ctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATg                                                       >  2:2060910‑M1/54‑91 (MQ=255)
                                     ctgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATg                                                       >  1:1020353‑M1/54‑91 (MQ=255)
                                     aTTTTGATTAGTATGCCTTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatg                                                       <  2:3168797‑M2/91‑6 (MQ=255)
                                     aTTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTgtctggatcattagtaccagatagatg                                                       <  1:267754‑M1/91‑28 (MQ=255)
                                      ttttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgc                                                      <  2:241770‑M2/91‑7 (MQ=255)
                                      tgaagatatggttaaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCGATCTGGTACTAATGATCCAGACAGATGc                                                      >  1:3143499‑M1/53‑91 (MQ=255)
                                       tttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgct                                                     >  2:2682739‑M2/1‑84 (MQ=255)
                                       tttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgct                                                     <  2:1887663‑M2/91‑8 (MQ=255)
                                        ttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTCATGATCCAGACagatgctt                                                    <  2:3387727‑M2/91‑9 (MQ=255)
                                          gATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgcttct                                                  >  1:3629566‑M2/1‑81 (MQ=255)
                                           aTTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgcttctt                                                 >  2:3241459‑M2/1‑80 (MQ=255)
                                           aTTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgcttctt                                                 <  2:875781‑M2/91‑12 (MQ=255)
                                            ttAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTgtctggatcattagtaccagatagatgcttctta                                                <  1:760511‑M1/91‑35 (MQ=255)
                                            ttAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCttt                                                >  1:1747348/1‑91 (MQ=255)
                                             tAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCtttt                                               >  2:1772192/1‑91 (MQ=255)
                                              aGTATGCATTTTCCATAAATCTCTCAACTTCTTCAGAGATAATTCAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCCTCttttt                                              >  2:3369191/1‑91 (MQ=255)
                                              aGTATGCATATTCCATAAATCTTTCAACGTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCttttt                                              <  2:3856280/91‑1 (MQ=255)
                                                tATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTa                                            <  2:678366/91‑1 (MQ=255)
                                                  tGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTACTGATCCAGACAGATGCTTCTTTTTTATc                                          >  2:372687/1‑91 (MQ=255)
                                                  tGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATc                                          <  1:3415121/91‑1 (MQ=255)
                                                  tGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATc                                          <  1:2567785/91‑1 (MQ=255)
                                                   gCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCa                                         <  1:809371/91‑1 (MQ=255)
                                                    cATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCaa                                        <  1:3938104/91‑1 (MQ=255)
                                                      ttttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAata                                      >  1:1032941/1‑91 (MQ=255)
                                                      ttttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAata                                      >  1:1033781/1‑91 (MQ=255)
                                                       tttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAatat                                     >  1:112339/1‑91 (MQ=255)
                                                       tttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAatat                                     <  2:3325443/91‑1 (MQ=255)
                                                         tCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAttt                                   <  1:2752970/91‑1 (MQ=255)
                                                          ccATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAtttt                                  <  1:426138/91‑1 (MQ=255)
                                                           cATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAttttc                                 >  2:1937499/1‑90 (MQ=255)
                                                            aTAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTAt                                <  2:2789713/91‑1 (MQ=255)
                                                                    ttCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCCTCTTTTTTATCAATATTTTATTGTTAtct                        >  2:1472927/1‑91 (MQ=255)
                                                                     tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgcttcttaattatctctgaagaagttgaaagat                       <  2:3518792‑M2/91‑38 (MQ=255)
                                                                     tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTAtctc                       <  2:1670456/91‑1 (MQ=255)
                                                                     tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTAtctc                       >  1:471195/1‑91 (MQ=255)
                                                                        aCTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCatt                    <  2:2035644/91‑1 (MQ=255)
                                                                        aCTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCatt                    <  1:517519/91‑1 (MQ=255)
                                                                         cttcttCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCatta                   <  1:2724154/91‑1 (MQ=255)
                                                                          ttcttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaa                  <  2:1136775/91‑1 (MQ=255)
                                                                           tcttcAGAGATGATGAAGAAGCATCTAGCTGGTACTAATGGTCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaat                 <  2:1219553/91‑1 (MQ=255)
                                                                           tcttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaat                 <  2:558070/91‑1 (MQ=255)
                                                                            cttcAGAGATAATTAATAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                <  2:2496493/91‑1 (MQ=255)
                                                                            cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                >  2:2076500/1‑91 (MQ=255)
                                                                            cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCCCattaatt                >  2:1210263/1‑91 (MQ=255)
                                                                                   gaTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGCCAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTa         >  2:829064/1‑91 (MQ=255)
                                                                                   gaTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTa         >  2:3401261/1‑91 (MQ=255)
                                                                                    aTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTaa        <  2:1237744/91‑1 (MQ=255)
                                                                                     tAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAAc       >  1:1303674/1‑91 (MQ=255)
                                                                                        ttAAGAAGCATCTATCTGGTACTAATGATCCAGACagatgcttcttttttatctctgaagaagttgaaagatttatggaaaatgcatacta    <  1:1784453‑M2/91‑57 (MQ=255)
                                                                                        ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCat    >  1:2838274/1‑91 (MQ=255)
                                                                                        ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCat    <  1:3853905/91‑1 (MQ=255)
                                                                                          aagaagCATCTgtctggatcattagtaccagatagacgcttcttaattatctctgaagaagttgaaagatttatggaaaatgcatactaat  <  2:3117953‑M1/91‑81 (MQ=255)
                                                                                          AAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCatat  >  1:1541877‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
GTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATAT  >  USA300TCH1516_ALE/2665391‑2665571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.