BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2744105 =	172 (0.840)	10 (0.060)	7/140	NT	6.8%	intergenic (+42/+151)	fda/mqo2	Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2
*	?	USA300TCH1516_ALE	2744143 =	124 (0.700)	10 (0.060)	7/140	NT	6.8%	intergenic (+80/+113)	fda/mqo2	Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2

Only 100 of 237 total aligned reads displayed.

AGGTGATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTAAAAAAATCG  >  USA300TCH1516_ALE/2744015‑2744195

cggacaactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaag                                                                                            >  1:514792‑M1/91‑91 (MQ=255)

cggacaactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaag                                                                                            >  1:576465‑M1/91‑91 (MQ=255)

cggacaactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaag                                                                                            >  2:3751659‑M1/91‑91 (MQ=255)

 ggacagctgaaaaatctttaagatttctcagttgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGa                                                                                           <  1:326409‑M1/2‑1 (MQ=255)

 ggacaactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGa                                                                                           <  2:3349916‑M1/2‑1 (MQ=255)

 ggTGATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGa                                                                                           >  1:821008/1‑91 (MQ=255)

  gTGATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGAc                                                                                          >  1:1417798/1‑91 (MQ=255)

   acagctgaaaaacctttaagatttctcagttgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACt                                                                                         <  1:2772941‑M1/4‑1 (MQ=255)

   acaactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACt                                                                                         <  2:3146626‑M1/4‑1 (MQ=255)

    gATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTc                                                                                        <  2:3586906/91‑1 (MQ=255)

    cagctgaaaaatctttaagatttctcagttgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTc                                                                                        <  2:3313652‑M1/5‑1 (MQ=255)

     aactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCa                                                                                       >  2:2070421‑M1/86‑91 (MQ=255)

     aactgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCa                                                                                       <  1:123389‑M1/6‑1 (MQ=255)

     aTGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCa                                                                                       <  2:1340304/91‑1 (MQ=255)

       gCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATa                                                                                     <  1:2325481/91‑1 (MQ=255)

       ctgagaaatcttaaagatttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaaaaaaaaaaaaaaaaGACTCATa                                                                                     >  2:3040757‑M1/84‑91 (MQ=255)

       ctgaaaaatctttaagatttctcagttgtccgatttttttacgtaatctaatacatacggcaagatcaactttaatcaaaaaaGACTCATa                                                                                     <  2:1072888‑M1/8‑1 (MQ=255)

       ctgaaaaatctttaagatttctcagttgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCATa                                                                                     <  1:3464904‑M1/8‑1 (MQ=255)

        cTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATAc                                                                                    <  2:1911459/91‑1 (MQ=255)

        cTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATAc                                                                                    >  1:3090376/1‑91 (MQ=255)

           tAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACAtg                                                                                 >  2:2034462/1‑91 (MQ=255)

           tAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACAtg                                                                                 <  1:600704/91‑1 (MQ=255)

            aGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGNACTNATACAtgt                                                                                >  1:28072/1‑91 (MQ=255)

            aGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACAtgt                                                                                >  1:314689/1‑91 (MQ=255)

               atcaatcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCt                                                                             <  2:623750/91‑1 (MQ=255)

                tcaatcTCCGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTATAAAGGACTCATACATGTCCtt                                                                            >  2:3937750/1‑91 (MQ=255)

                tcaatcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCtt                                                                            >  1:3140387/1‑91 (MQ=255)

                tcaatcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCtt                                                                            >  1:976587/1‑91 (MQ=255)

                 caatcTACGACGCATCTGTAAACTAAAACTAATTTATACATTAAACTATATTTTGATATTAACTACTAAAAAGGACTCATACATGTGCttt                                                                           <  2:3012818/91‑1 (MQ=255)

                 caatcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCttt                                                                           <  1:3391503/91‑1 (MQ=255)

                 caatcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCttt                                                                           <  1:401613/91‑1 (MQ=255)

                  aatcTACGACGCATCTGTAAACAAAATCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTa                                                                          >  2:2236369/1‑91 (MQ=255)

                   atcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTaa                                                                         <  1:2491604/91‑1 (MQ=255)

                    tcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTaaa                                                                        >  2:2786424/1‑91 (MQ=255)

                    tcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTaaa                                                                        >  2:2842110/1‑91 (MQ=255)

                    tcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTaaa                                                                        >  1:1134354/1‑91 (MQ=255)

                    tcTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTaaa                                                                        >  1:2049727/1‑91 (MQ=255)

                       atttttcagctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaagGACTCATACATGTGCTTTAAAGGc                                                                     >  2:2306834‑M1/68‑91 (MQ=255)

                       acgacgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGc                                                                     <  2:1272021/91‑1 (MQ=255)

                       acgacgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGc                                                                     <  1:2217365/91‑1 (MQ=255)

                         gacgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGcct                                                                   >  2:120809/1‑89 (MQ=255)

                         gacgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCAt                                                                   <  1:1137370/91‑1 (MQ=255)

                           cgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATtg                                                                 >  1:29520/1‑91 (MQ=255)

                           cgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATtg                                                                 >  1:2157932/1‑91 (MQ=255)

                           cgCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATtg                                                                 >  1:3607580/1‑91 (MQ=255)

                             cATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATtgtg                                                               >  2:2355793/1‑91 (MQ=255)

                             cATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATtgtg                                                               >  2:1995841/1‑91 (MQ=255)

                              aTCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTgtgt                                                              >  1:909500/1‑91 (MQ=255)

                               tCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTa                                                             <  1:3641437/91‑1 (MQ=255)

                                ctgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCATACATGTGCTTTAAAGGCATTGTGTAt                                                            >  1:3534714‑M1/59‑91 (MQ=255)

                                 tgtccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCATACATGTGCTTTAAAGGCATTGTGTATg                                                           >  1:1473005‑M1/58‑91 (MQ=255)

                                   tAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAg                                                         <  1:2716946/91‑1 (MQ=255)

                                    ccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGt                                                        >  2:3130398‑M1/55‑91 (MQ=255)

                                    ccgatttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaaaGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGt                                                        >  2:3821898‑M1/55‑91 (MQ=255)

                                     aaCAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTc                                                       >  2:775576/1‑91 (MQ=255)

                                       cAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtt                                                     >  2:1500937/1‑91 (MQ=255)

                                         ttttttacgtaatctaatacatacggcaaaatcaactttaatcaaaaagGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttt                                                   >  1:16461‑M1/50‑91 (MQ=255)

                                         aaaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttt                                                   <  1:3571473/91‑1 (MQ=255)

                                         aaaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttt                                                   <  1:119710/91‑1 (MQ=255)

                                          aaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttt                                                  >  1:3872696/1‑91 (MQ=255)

                                          aaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttt                                                  >  2:1719991/1‑91 (MQ=255)

                                           aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                 >  2:1782537/1‑91 (MQ=255)

                                           aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                 >  1:104686/1‑91 (MQ=255)

                                           aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                 >  2:1394505/1‑91 (MQ=255)

                                            aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttttt                                                >  2:2199236/1‑90 (MQ=255)

                                            aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTg                                                >  2:1413567/1‑91 (MQ=255)

                                            aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTg                                                >  2:2660264/1‑91 (MQ=255)

                                            aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTg                                                >  2:2201720/1‑91 (MQ=255)

                                               aaTTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGAtt                                             >  1:3325198/1‑91 (MQ=255)

                                                 tttATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTaa                                           >  1:648431/1‑91 (MQ=255)

                                                   tataCATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAg                                         >  2:1790023/1‑91 (MQ=255)

                                                    ataCATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGt                                        <  1:741926/91‑1 (MQ=255)

                                                     taCATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGtt                                       <  1:3212681/91‑1 (MQ=255)

                                                       cATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGa                                     <  2:3591292/91‑1 (MQ=255)

                                                         ttAAACTATTTTTTTTTTTTTACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGAtt                                   >  2:1866063/1‑91 (MQ=255)

                                                         ttAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGAtt                                   <  2:1611992/91‑1 (MQ=255)

                                                          tAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGAttt                                  >  1:799737/1‑91 (MQ=255)

                                                             aCTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGc                               <  1:2009195/91‑1 (MQ=255)

                                                              cTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGcc                              >  2:3193760/1‑91 (MQ=255)

                                                                aTTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgt                            >  1:2627944/1‑91 (MQ=255)

                                                                 ttttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTTTTTTTTGTTGATTTTGCCgta                           >  2:2615145/1‑91 (MQ=255)

                                                                  tttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtat                          >  2:873007/1‑91 (MQ=255)

                                                                  tttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtat                          <  2:1505371/91‑1 (MQ=255)

                                                                      tGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtatgtat                      >  1:571670/1‑91 (MQ=255)

                                                                         tataAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAg                   <  1:3729462/91‑1 (MQ=255)

                                                                             aaCTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTa               >  2:848611/1‑91 (MQ=255)

                                                                             aaCTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATCGCAAACGACTATTTCTTGCTTCCAGTTGACTTTGCCCTCTGtattatatta               >  2:1550978/1‑91 (MQ=255)

                                                                              actactAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTAc              >  1:424065/1‑91 (MQ=255)

                                                                               ctactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACg             <  2:188833/91‑1 (MQ=255)

                                                                               cgactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACg             <  2:3502673/89‑1 (MQ=255)

                                                                                tactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGt            <  1:131254/91‑1 (MQ=255)

                                                                                tactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGt            <  1:1798752/91‑1 (MQ=255)

                                                                                tactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGt            <  1:3943783/91‑1 (MQ=255)

                                                                                 actaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTa           >  1:1700057/1‑91 (MQ=255)

                                                                                  ctaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGAATTAGATTACGTaa          >  1:764002/1‑91 (MQ=255)

                                                                                   taAAAAGGACTCATACATGTGCTTTAAAGTCATTGTGTACGAGTCTTTTTGGATTGAAGTTGATTTTGCCGTATGTATTAGATTACGTaaa         >  2:3399458/1‑91 (MQ=255)

                                                                                     aaaaGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTaacaa       >  2:3524598/1‑91 (MQ=255)

                                                                                     aaaaGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTaaaaa       >  2:1075943/1‑91 (MQ=255)

                                                                                       aaGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGACTCAAGTTGATTTTGCCGTATGTATTAGATTACGTaaaaaaa     >  2:363939/1‑91 (MQ=255)

                                                                                          GACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTAAAAAAATCg  >  2:1484010‑M1/1‑91 (MQ=255)

AGGTGATGCTGTAGAATCAATCTACGACGCATCTGTAAACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTAAAAAAATCG  >  USA300TCH1516_ALE/2744015‑2744195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.