BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2744105 =	172 (0.840)	10 (0.060)	7/140	NT	6.8%	intergenic (+42/+151)	fda/mqo2	Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2
*	?	USA300TCH1516_ALE	2744143 =	124 (0.700)	10 (0.060)	7/140	NT	6.8%	intergenic (+80/+113)	fda/mqo2	Fructose‑bisphosphate aldolase class 1/putative malate:quinone oxidoreductase 2

Only 100 of 241 total aligned reads displayed.

ACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTCCGA  >  USA300TCH1516_ALE/2744053‑2744233

aCAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCt                                                                                             >  2:2624534/1‑91 (MQ=255)

aCAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCt                                                                                             >  2:1211768/1‑91 (MQ=255)

 cAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtt                                                                                            >  2:1500937/1‑91 (MQ=255)

   aaaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttt                                                                                          <  1:119710/91‑1 (MQ=255)

    aaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttt                                                                                         >  1:3872696/1‑91 (MQ=255)

    aaaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttt                                                                                         <  2:844528/91‑1 (MQ=255)

     aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                                                        >  1:104686/1‑91 (MQ=255)

     aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                                                        >  2:1782537/1‑91 (MQ=255)

     aaCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCtttttt                                                                                        >  2:1394505/1‑91 (MQ=255)

      aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCttttttt                                                                                       >  2:2199236/1‑90 (MQ=255)

      aCTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTg                                                                                       >  2:1413567/1‑91 (MQ=255)

         aaTTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGAtt                                                                                    >  1:3110061/1‑91 (MQ=255)

         aaTTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGAtt                                                                                    >  1:889519/1‑91 (MQ=255)

          aTTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTa                                                                                   >  1:1406165/1‑91 (MQ=255)

           tttATACATTAAACTATTTTTTTATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTaa                                                                                  >  2:1471121/1‑91 (MQ=255)

              ataCATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGt                                                                               <  1:741926/91‑1 (MQ=255)

                 cATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGa                                                                            <  2:3595270/91‑1 (MQ=255)

                 cATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGa                                                                            >  2:3399409/1‑91 (MQ=255)

                   ttAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGAtt                                                                          <  2:1611992/91‑1 (MQ=255)

                          aTTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgt                                                                   >  2:1825349/1‑91 (MQ=255)

                            tttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtat                                                                 <  2:1505371/91‑1 (MQ=255)

                            tttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtat                                                                 >  2:873007/1‑91 (MQ=255)

                             ttttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtatg                                                                <  2:3624297/91‑1 (MQ=255)

                               ttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtatgta                                                              <  2:793277/91‑1 (MQ=255)

                               ttGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtatgta                                                              <  2:2211578/91‑1 (MQ=255)

                                tGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCgtatgtat                                                             >  1:571997/1‑91 (MQ=255)

                                 gATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTAtt                                                            >  1:165915/1‑91 (MQ=255)

                                  atatAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGCTTTTGCCGTATGTATTa                                                           >  1:3388707/1‑91 (MQ=255)

                                   tataAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAg                                                          <  1:2769236/91‑1 (MQ=255)

                                     taAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGAt                                                        <  1:667839/91‑1 (MQ=255)

                                       aaCTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATCGCAAACGACTATTTCTTGCTTCCAGTTGACTTTGCCCTCTGtattatatta                                                      >  2:1550978/1‑91 (MQ=255)

                                          tactaAAAAGGTCTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGt                                                   <  1:764389/91‑1 (MQ=255)

                                          tactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTCCGt                                                   >  1:3184446/1‑91 (MQ=255)

                                          tactaAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGt                                                   <  1:3943783/91‑1 (MQ=255)

                                            ctaAAAACGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑aa                                                <  2:3518517/91‑1 (MQ=255)

                                               aaaaGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑aaaaa                                             >  2:1075943/1‑91 (MQ=255)

                                                     actcatacacaatgcctttaaagcacatgtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCgg                                       >  2:3821898‑M2/38‑91 (MQ=255)

                                                     actcatacacaatgcctttaaagcacatgtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCgg                                       >  2:3130398‑M2/38‑91 (MQ=255)

                                                     ACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCgg                                       >  1:3711216‑M1/1‑91 (MQ=255)

                                                       TCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGAc                                     >  2:2640670‑M1/1‑91 (MQ=255)

                                                        catacacaatgcctttaaagcacatgtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    >  2:3413231‑M2/35‑91 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGTTTTTTGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  2:1873542‑M1/91‑1 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  1:1250214‑M1/91‑1 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  2:1736416‑M1/91‑1 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  2:1698405‑M1/91‑1 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  1:444554‑M1/91‑1 (MQ=255)

                                                        CATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACa                                    <  1:3246959‑M1/91‑1 (MQ=255)

                                                         atacacaatgcctttaaagcacatgtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAg                                   >  1:3534714‑M2/34‑91 (MQ=255)

                                                         ATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAg                                   <  1:1379868‑M1/91‑1 (MQ=255)

                                                         ATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAg                                   <  1:1804620‑M1/91‑1 (MQ=255)

                                                         ATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAg                                   >  2:3460903‑M1/1‑91 (MQ=255)

                                                         ATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCATATGTATTAGATTACGT‑AAAAAAATCGGACAg                                   <  1:3356105‑M1/91‑1 (MQ=255)

                                                           acacaatgcctttaaagcacatgtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCt                                 >  1:1849975‑M2/32‑91 (MQ=255)

                                                           ACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCt                                 >  1:791933‑M1/1‑91 (MQ=255)

                                                            CATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTTAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTg                                <  2:3664492‑M1/91‑1 (MQ=255)

                                                             ATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGa                               >  1:256815‑M1/1‑91 (MQ=255)

                                                              tgtgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGaa                              <  1:1343641/91‑1 (MQ=255)

                                                              tgtgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGaa                              <  2:2946868/91‑1 (MQ=255)

                                                              tgtgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGAACAGCTGaa                              <  2:555563/91‑1 (MQ=255)

                                                                tgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGTTTATTGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGaaaa                            >  2:2984636/1‑91 (MQ=255)

                                                                tgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGaaaa                            <  1:2749815/91‑1 (MQ=255)

                                                                tgCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGaaaa                            <  1:1571777/91‑1 (MQ=255)

                                                                  cTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAAt                          >  2:905161/1‑91 (MQ=255)

                                                                  cTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAAt                          <  2:3169969/91‑1 (MQ=255)

                                                                    ttAAAGCCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCt                        >  1:3076378/1‑91 (MQ=255)

                                                                      aaaGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCttt                      >  2:2556726/1‑91 (MQ=255)

                                                                      aaaGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCtta                      <  1:2632278/91‑2 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTTATTAGTGTTGATTTTGCAGTATGTATTAGAGTTCGT‑AGAAAGATCGGTCATCTGAAATATCTTTaa                    >  2:92614/1‑91 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    >  2:2405658/1‑91 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    <  1:2034462/91‑1 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    <  2:1894149/91‑1 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    <  1:988404/91‑1 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    <  2:3489163/91‑1 (MQ=255)

                                                                        aGGCATTGTGTATGAGTCTTTTCTGATTAGAGTTGATTTGGCCGTATGTATTAGAATACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTaa                    <  2:3259982/91‑1 (MQ=255)

                                                                         ggCATTGTGTATGAGTCTTTTTTGATTAATGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAg                   >  2:203514/1‑91 (MQ=255)

                                                                           cATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGTAAAAAAAATCGGACAGCTGAAAAATCTTTAAGa                  >  1:3594496/1‑91 (MQ=255)

                                                                            aTTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGAtt                >  2:3539080/1‑91 (MQ=255)

                                                                             ttGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGAttt               >  2:2767637/1‑91 (MQ=255)

                                                                             ttGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGAttt               <  2:1045222/91‑1 (MQ=255)

                                                                             ttGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGAttt               <  1:3754009/91‑1 (MQ=255)

                                                                              tgtgTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAGAAATCTTAAAGAtttt              <  2:512884/91‑2 (MQ=255)

                                                                              tgtgTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGAtttt              <  1:195470/91‑2 (MQ=37)

                                                                               gtgtATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTtct             >  1:2433428/1‑91 (MQ=255)

                                                                               gtgtATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGAttttt             <  2:671273/91‑3 (MQ=37)

                                                                                 gtatgagtcTTTTTTGATTAAAGTTTATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGATTTTTCa           <  1:2902286‑M2/82‑1 (MQ=255)

                                                                                 gtatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCa           >  1:2238336‑M2/10‑91 (MQ=255)

                                                                                  tatgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGAtttctccg          >  1:1477425‑M2/9‑89 (MQ=255)

                                                                                   atgagtcTTATTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGt         <  1:3787543‑M2/84‑1 (MQ=255)

                                                                                    tgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGtt        <  1:123389‑M2/85‑1 (MQ=255)

                                                                                    tgagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGtt        >  2:2070421‑M2/7‑91 (MQ=255)

                                                                                     gagtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGATTTTTCAGCTg       <  2:3313652‑M2/86‑1 (MQ=255)

                                                                                      agtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGt      <  2:3146626‑M2/87‑1 (MQ=255)

                                                                                      agtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGATTTTTCAGCTGt      <  1:567654‑M2/87‑1 (MQ=255)

                                                                                       gtcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTc     >  2:2329511‑M2/4‑91 (MQ=255)

                                                                                        tcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTcc    <  2:3349916‑M2/89‑1 (MQ=255)

                                                                                        tcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTcc    <  1:1134641‑M2/89‑1 (MQ=255)

                                                                                        tcTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGATTTTTCAGCTGTcc    <  1:1769984‑M2/89‑1 (MQ=255)

                                                                                         cTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTCCg   >  2:3751659‑M2/2‑91 (MQ=255)

                                                                                         cTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTCCg   >  1:576465‑M2/2‑91 (MQ=255)

                                                                                         cTTTTTTGATTAAAGTTGATTTTGCCGTATGTA‑TAGATTACGT‑AAAAAAATCGGACAACTGAGAAATCTTAAAGATTTTTCAGCTGTCCGa  <  2:854722‑M2/90‑1 (MQ=255)

ACAAAAACTAATTTATACATTAAACTATTTTTTGATATAAACTACTAAAAAGGACTCATACATGTGCTTTAAAGGCATTGTGTATGAGTCTTTTTTGATTAAAGTTGATTTTGCCGTATGTATTAGATTACGT‑AAAAAAATCGGACAGCTGAAAAATCTTTAAGATTTCTCAGTTGTCCGA  >  USA300TCH1516_ALE/2744053‑2744233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.