BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2772633 =	174 (0.850)	32 (0.190)	10/134	NT	20.5%	intergenic (+7/+53)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein
*	?	USA300TCH1516_ALE	2772676 =	103 (0.610)	32 (0.190)	10/134	NT	20.5%	intergenic (+50/+10)	phoB/USA300TCH1516_02632	Alkaline phosphatase 3/hypothetical protein

Only 100 of 280 total aligned reads displayed.

GCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTT  >  USA300TCH1516_ALE/2772543‑2772723

gCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaa                                                                                             <  1:600713/91‑1 (MQ=255)

 cTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaa                                                                                            >  1:2726742/1‑91 (MQ=255)

  ttACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaa                                                                                           >  1:2768646/1‑91 (MQ=255)

  acattagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataaa                                                                                           >  2:1752125‑M1/89‑91 (MQ=255)

  acattagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataaa                                                                                           >  1:2063070‑M1/89‑91 (MQ=255)

    aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                         <  1:2534751/91‑1 (MQ=255)

    aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                         <  1:2798243/91‑1 (MQ=255)

    aCGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaa                                                                                         >  2:313410/1‑91 (MQ=255)

     ttagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataaaaaa                                                                                        >  2:2039996‑M1/86‑91 (MQ=255)

     ttagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccataaaaaa                                                                                        <  1:1990919‑M1/6‑1 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  1:967861/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  1:2290451/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  2:3457704/1‑91 (MQ=255)

     cGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATaaaaaaa                                                                                        >  2:1201213/1‑91 (MQ=255)

      tagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑t                                                                                      <  2:1056851‑M1/7‑1 (MQ=255)

      tagttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑t                                                                                      <  2:506193‑M1/7‑1 (MQ=255)

      ggACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑t                                                                                      >  2:1938028/1‑91 (MQ=255)

       gACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑tt                                                                                     <  1:1603760/91‑1 (MQ=255)

        gttggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTc                                                                                    <  2:1363539‑M1/9‑1 (MQ=255)

        aCCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTc                                                                                    <  1:250230/91‑1 (MQ=255)

           ggcggtttatacttcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCg                                                                                 >  2:698122‑M1/80‑91 (MQ=255)

             gATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAATA‑TTCCCGAg                                                                               >  1:3550108/1‑91 (MQ=255)

             gATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAg                                                                               <  1:1451444/91‑1 (MQ=255)

               tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCa                                                                             >  2:1419686/1‑91 (MQ=255)

               tCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCa                                                                             >  2:2886493/1‑91 (MQ=255)

                aaGAATCATTGAGTGGTAATATCGAAAATACAGAAAGCGAAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCAc                                                                            <  2:3580434/90‑1 (MQ=255)

                 aGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACt                                                                           >  1:1264576/1‑91 (MQ=255)

                  gAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACta                                                                          <  2:1548342/91‑1 (MQ=255)

                    aTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACtata                                                                        >  2:2717517/1‑91 (MQ=255)

                    aTCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACtata                                                                        >  1:2440720/1‑91 (MQ=255)

                     tCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATaa                                                                       >  2:1296850/1‑91 (MQ=255)

                      cATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAAc                                                                      >  1:1169898/1‑91 (MQ=255)

                      cATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAAc                                                                      <  1:1566500/91‑1 (MQ=255)

                      cATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAAc                                                                      <  1:952882/91‑1 (MQ=255)

                      cATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAAc                                                                      <  1:460087/91‑1 (MQ=255)

                       aTTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACa                                                                     >  2:829259/1‑91 (MQ=255)

                        tcgcatttaaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACaa                                                                    >  2:1686637‑M1/67‑91 (MQ=255)

                          tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAgg                                                                  >  2:430907/1‑91 (MQ=255)

                          tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAgg                                                                  >  2:1976040/1‑91 (MQ=255)

                          tAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATACTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAgg                                                                  >  2:3248747/1‑91 (MQ=255)

                           aGTGGTAATGTCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgt                                                                 <  1:3786016/91‑1 (MQ=255)

                            gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtg                                                                >  2:390142/1‑91 (MQ=255)

                            gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtg                                                                >  2:1655193/1‑91 (MQ=255)

                            gTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtg                                                                >  1:153019/1‑91 (MQ=255)

                             tGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtgt                                                               >  1:1835698/1‑91 (MQ=255)

                             tGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtgt                                                               <  1:3735478/91‑1 (MQ=255)

                             tGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGgtgt                                                               <  1:2946923/91‑1 (MQ=255)

                                aaaaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCg                                                            >  2:1124955‑M1/59‑91 (MQ=255)

                                 aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCgg                                                           <  1:1233300/91‑1 (MQ=255)

                                 aaTATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCgg                                                           >  2:247516/1‑91 (MQ=255)

                                  atatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCggg                                                          >  1:3194504/1‑91 (MQ=255)

                                  aaaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCggg                                                          >  1:173519‑M1/57‑91 (MQ=255)

                                   tatCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGa                                                         >  2:260853/1‑91 (MQ=255)

                                   aaataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGa                                                         >  1:1032031‑M1/56‑91 (MQ=255)

                                    atCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                        <  2:2726742/91‑1 (MQ=255)

                                     tCGAAAATACAGAAAGCGCAAAAATAATATTTTATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAt                                                       <  1:3373021/91‑1 (MQ=255)

                                     ataccaagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGaa                                                        >  1:687907‑M1/54‑91 (MQ=255)

                                      cGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAtt                                                      >  2:2975910/1‑91 (MQ=255)

                                       gAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAttt                                                     <  1:329702/91‑1 (MQ=255)

                                         caagaacgtgttaaccaagcacctaacattgagtactaaattaaaccatAAAAAAATTCCCGAGCACTATAACAAGGTGTTCGGGAAtttt                                                    >  1:1704765‑M1/50‑91 (MQ=255)

                                         aaaTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAAttttt                                                   >  2:1261547/1‑91 (MQ=255)

                                           aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTa                                                 <  1:2041702/91‑1 (MQ=255)

                                           aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTa                                                 <  2:3719801/91‑1 (MQ=255)

                                           aTACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTa                                                 <  1:3472363/91‑1 (MQ=255)

                                            tACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTAt                                                <  1:3907574/91‑1 (MQ=255)

                                               aGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGt                                             >  2:564424‑M2/1‑90 (MQ=255)

                                                 aaaGCGCAGAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGttt                                           >  1:1636474‑M2/1‑88 (MQ=255)

                                                 aaaGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGttt                                           >  1:859217‑M2/1‑88 (MQ=255)

                                                  aaGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGttta                                          >  1:779837‑M2/1‑87 (MQ=255)

                                                      gcAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTTAttt                                      <  1:3118660/91‑1 (MQ=255)

                                                        aaaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAg                                    >  1:3635227/1‑91 (MQ=255)

                                                         aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                   >  1:1378845/1‑91 (MQ=255)

                                                         aaaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGt                                   >  2:2124709/1‑91 (MQ=255)

                                                          aaaTAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTa                                  >  2:2076018/1‑91 (MQ=255)

                                                           aataatATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTAc                                 >  2:1809338/1‑91 (MQ=255)

                                                             taataTTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTc                               <  1:110050/91‑1 (MQ=255)

                                                              aataTTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtttacttgaatatatc                              <  1:2261395‑M2/91‑17 (MQ=255)

                                                              aataTTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCa                              >  1:1035906/1‑91 (MQ=255)

                                                              aataTTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCa                              >  2:2203456/1‑91 (MQ=255)

                                                                 atTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTCTAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATg                           >  2:3050959/1‑91 (MQ=255)

                                                                  tttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGt                          >  1:2204914/1‑91 (MQ=255)

                                                                   ttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGtt                         >  1:927343/1‑91 (MQ=255)

                                                                   ttGATATATTCAAGTAAAGCATAAAAAAA‑TTCCAGAGTACTATAACCAGGTGTTCGGGATTTTTTTATGGTTTAATTTAGTACTCAATGtt                         >  1:3155124/1‑91 (MQ=255)

                                                                        atatTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTg                    >  2:408771/1‑91 (MQ=255)

                                                                        atatTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGATCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTg                    >  2:1389025/1‑91 (MQ=255)

                                                                         gatTCAAGTAAAGCAGAAAAAAA‑TTCCCGTGCGCTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGc                   <  2:3496299/90‑1 (MQ=255)

                                                                          atTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTCTGGCTTAATTCAGTACTCAATGTTAGGCGCt                  >  2:572141/1‑91 (MQ=255)

                                                                             cAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTgg               >  1:288289/1‑91 (MQ=255)

                                                                              aaGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGt              <  1:197230/91‑1 (MQ=255)

                                                                               aGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGtttacttgaatatatcaaatattatttttgcgc             <  1:3653120‑M2/91‑34 (MQ=255)

                                                                               aGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt             >  2:3813027/1‑91 (MQ=255)

                                                                               aGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGtt             >  2:2373433/1‑91 (MQ=255)

                                                                                 tAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa           >  1:2675283/1‑91 (MQ=255)

                                                                                 tAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa           >  1:2343685/1‑91 (MQ=255)

                                                                                 tAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTaa           <  2:2067393/91‑1 (MQ=255)

                                                                                  agaGCATAAAAAAG‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATATAGTACTCAATGTTAGGTGCTTGGTTAac          <  2:3447347/89‑1 (MQ=255)

                                                                                      cATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGt      >  1:892046/1‑91 (MQ=255)

                                                                                       aTAAAAAAA‑TTCCCGAGCACTATAACACGGTGTTCGGGAATTTTTTATGGTTTAATTTAGAACTCAATGTTAGGTGCTTGGTTAACACGtt     >  2:3935670/1‑91 (MQ=255)

                                                                                         aaaaaaa‑TTCCCGGGCACTATAACAAGGTGTGCGGGAATTTTTTATGGTTTAATTTAGTACTCAAGGTTAGGTGCTTGGTTAACACGTTCt   >  2:634241/1‑91 (MQ=255)

                                                                                         aaaaaaa‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCt   >  1:3000537/1‑91 (MQ=255)

GCTTACGGACCTAGATCAGAATCATTTAGTGGTAATATCGAAAATACAGAAAGCGCAAAAATAATATTTGATATATTCAAGTAAAGCATAAAAAAA‑TTCCCGAGCACTATAACAAGGTGTTCGGGAATTTTTTATGGTTTAATTTAGTACTCAATGTTAGGTGCTTGGTTAACACGTTCTT  >  USA300TCH1516_ALE/2772543‑2772723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.