| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127847 | 160 (0.790) | 8 (0.050) | 4/138 | NT | 5.5% | intergenic (+67/+262) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 127871 | 138 (0.790) | intergenic (+91/+238) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
Only 100 of 295 total aligned reads displayed.
TTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTT > USA300TCH1516_ALE/127757‑127937 | acttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAg < 1:1172385‑M1/11‑1 (MQ=255)acttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAg > 2:1745299‑M1/81‑91 (MQ=255) tataCTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTa < 1:3451457/91‑1 (MQ=255) ataCTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTAc < 1:1767471/91‑1 (MQ=255) tAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGaaa > 1:3713218/1‑91 (MQ=255) aaCGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAAt > 2:1863672/1‑91 (MQ=255) aaCGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAAt < 2:891703/91‑1 (MQ=255) ttAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCaa > 1:2117109/1‑91 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg < 1:3747594/91‑1 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg > 2:555478/1‑91 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg > 1:937939/1‑91 (MQ=255) atatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGa < 1:3301355/91‑1 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 1:2872514/91‑1 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg > 1:1311397/1‑91 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 2:1538049/91‑1 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTAGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 2:2715096/91‑1 (MQ=255) ttCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa > 2:173293/1‑91 (MQ=255) ttCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa > 1:1193911/1‑91 (MQ=255) ttCTAAATATAAATAAGGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa < 1:1665254/91‑1 (MQ=255) tCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCAt > 1:351676/1‑91 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc > 1:2374580/1‑91 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc < 1:149000/91‑1 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc < 1:565350/91‑1 (MQ=255) taaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt < 2:2217847/91‑1 (MQ=255) taaatataaataATGTTATCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt < 1:3383814/91‑1 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt < 1:3480644/91‑1 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt > 1:2770097/1‑91 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt > 1:1145963/1‑91 (MQ=255) aatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTg > 2:304144/1‑91 (MQ=255) aacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCatcttatc > 2:1040247‑M1/56‑88 (MQ=255) gcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAg > 1:2507273‑M1/53‑91 (MQ=255) aaataaTGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTATGAAATGCAATGAGCATCTTGTctag > 1:3874990‑M2/1‑87 (MQ=255) cctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGt > 2:3633480‑M1/52‑91 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 1:294408‑M2/1‑86 (MQ=255) ataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagtt > 2:3751653‑M2/1‑85 (MQ=255) ataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagtt > 1:2283514‑M2/1‑85 (MQ=255) taatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGacaagatgctcattgcatttcgtactagttc < 1:3206873‑M1/91‑32 (MQ=255) aatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcg > 1:2139344‑M2/1‑83 (MQ=255) atGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcga > 2:1325602‑M2/1‑82 (MQ=255) atGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcga > 1:324453‑M2/1‑82 (MQ=255) atGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcga > 1:1639144‑M2/1‑82 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt < 2:1128300‑M2/91‑12 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3473864‑M2/1‑80 (MQ=255) tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttt > 1:1740153/1‑91 (MQ=255) gtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAttttt > 1:783739/1‑91 (MQ=255) cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTCGTACGAAATGCAATGAGCATCTTGTCTATTTCGTTTTTTTa > 2:618336/1‑91 (MQ=255) cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTa > 2:3265903/1‑91 (MQ=255) ttGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATg < 2:907967/91‑1 (MQ=255) tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGc < 2:1791903/91‑1 (MQ=255) gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt > 1:3054766/1‑91 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa < 2:2008814/91‑1 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa > 1:1447866/1‑91 (MQ=255) tCAAATGACATTTTAATTCTAATTATTCATGAATCGAAGTAGTACGAAATGCAATGAGAGTCTTGTCTAGTTCGATTTTTTTATGGCTgaa < 2:3774632/91‑1 (MQ=255) cAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaa > 2:2164664/1‑91 (MQ=255) aTTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCata > 2:1107592/1‑91 (MQ=255) ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat < 1:3847088/91‑1 (MQ=255) aaaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGt < 2:507843/91‑1 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa > 2:3341998/1‑91 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa > 1:84970/1‑91 (MQ=255) tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCa > 1:1597586/1‑91 (MQ=255) ttattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCagag < 2:3825708/91‑1 (MQ=255) tattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGt < 2:1211683/91‑1 (MQ=255) attCATGAATCGAAGTAGTACGAAATGAAATGAGCGTCTTGTCTGGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTa < 2:2593593/91‑1 (MQ=255) cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa > 1:1201813/1‑91 (MQ=255) cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa > 1:35837/1‑91 (MQ=255) tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg > 1:2233077/1‑91 (MQ=255) tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg < 1:2728750/91‑1 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:2179026/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:1940529/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt < 1:335906/91‑1 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:3489118/1‑91 (MQ=255) aaTCGAACTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaac > 1:3524347‑M1/1‑11 (MQ=255) ATCGAGCTAATAATAAATGCAATGATCATTTTGTCTAGTTCGATTTTTTAATTCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgtgt > 2:18266‑M1/1‑91 (MQ=255) ATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgtgt > 2:3433405‑M1/1‑91 (MQ=255) tCGAACTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacat > 2:2249014‑M1/1‑9 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt > 2:2941939‑M1/1‑91 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt > 1:1930367‑M1/1‑91 (MQ=255) TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt < 1:2490953‑M1/91‑1 (MQ=255) cGAACTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacatt > 1:2139319‑M1/1‑8 (MQ=255) cGAACTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacatt < 2:371924‑M1/91‑84 (MQ=255) cGAACTAGacaagatgctcattgcatttcgtactagttcgagtcatgaataattagatttaaaatgtcatttgaatccaagtgacaacatt < 2:1296814‑M1/91‑84 (MQ=255) gAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacatta < 1:3207593‑M2/91‑61 (MQ=255) AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg > 2:3693095‑M1/1‑91 (MQ=255) AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg < 2:769298‑M1/91‑1 (MQ=255) AACTAGTACGAAATGCAATGAGCAGCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg > 2:3359143‑M1/1‑91 (MQ=255) aCTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt > 2:1341708‑M1/1‑5 (MQ=255) aCTAGacaagatgctcattgcatttcgtactagttcgattcacgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt > 2:2583102‑M1/1‑5 (MQ=255) aCTAGTACGAAATGCAATGAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatt < 2:3788673‑M2/91‑63 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 2:1466075‑M1/91‑1 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 2:3818110‑M1/91‑1 (MQ=255) ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg < 1:480504‑M1/91‑1 (MQ=255) cTAGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattattt < 1:3692457‑M1/91‑88 (MQ=255) cTAGTACGAAATGCAATAAGCATCTTGTctagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattattt < 2:2766677‑M2/91‑64 (MQ=255) TAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCg > 2:1629916‑M1/1‑91 (MQ=255) aGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatttat > 2:2309999‑M1/1‑2 (MQ=255) aGacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatttat < 2:2076069‑M1/91‑90 (MQ=255) AGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGt < 1:121954‑M1/91‑1 (MQ=255) AGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGCCATCTATGTCATCAGAGTAGAGAGTGTTGAGGcga < 2:3912461‑M1/91‑2 (MQ=255) gacaagatgctcattgcatttcgtactagttcgattcatgaataattagatttaaaatgtcatttgaatccaagtgacaacattatttata > 2:939533‑M1/1‑1 (MQ=255) GTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGtt < 2:83016‑M1/91‑1 (MQ=255) | TTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTT > USA300TCH1516_ALE/127757‑127937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |